Evidence map›Paper›PMID 30168096›Full record

ArticleMolecular biology reports2018

Polymorphisms in the 3'-UTR of SCD5 gene are associated with hepatocellular carcinoma in Korean population.

Gyeong Im Yu, Kwang Ho Mun, Seon Hee Yang, Dong Hoon Shin, Jae Seok Hwang

Abstract read
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In one paragraph

Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Gyeong Im YuDepartment of Preventive Medicine, School of Medicine, and Institute for Cancer Research, Keimyung University, Daegu, Republic of Korea.
Kwang Ho MunDepartment of Preventive Medicine, School of Medicine, and Institute for Cancer Research, Keimyung University, Daegu, Republic of Korea.
Seon Hee YangDepartment of Occupational and Environmental Medicine, Dongsan Medical Center, and Institute for Cancer Research, Keimyung University, Daegu, Republic of Korea.
Dong Hoon ShinDepartment of Preventive Medicine, School of Medicine, and Institute for Cancer Research, Keimyung University, Daegu, Republic of Korea. dhshin825@gmail.com.ORCID http://orcid.org/0000-0002-3623-7013
Jae Seok HwangDepartment of Internal Medicine, School of Medicine, and Institute for Cancer Research, Keimyung University, Daegu, Republic of Korea. gastro@dsmc.or.kr.
Keimyung University · KRKeimyung University Dongsan Medical Center · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The purpose of the study was to assess the relationship between polymorphisms of the SCD5 and MMP1 gene and hepatocellular carcinoma (HCC). The gene polymorphisms with a minor allele frequency (MAF) > 0.05 were selected eight SNPs (rs6840, rs1065403, rs3821974, and rs3733230 in 3'-UTR; rs4693472, rs3733227, rs1848067, and rs6535374 in intron region) of SCD5 gene and two SNPs (rs1799750 and rs1144393 in promoter region) of MMP1 gene. The genotype of SCD5 and MMP1 gene SNPs were determined by direct sequencing and pyrosequencing, respectively. One hundred sixty-two patients with HCC and two hundred twenty-five control subjects were recruited in Korean male population. In terms of genotype frequencies, SCD5 genotype TC, GA, AG, and CG of rs6840, rs1065403, rs3821974, and rs3733230, respectively were higher in control group than HCC. In addition, these genotype decreased the risk (rs6840; OR 0.55, 95% CI 0.31-0.99; rs1065403; OR 0.46, 95% CI 0.26-0.83; rs3821974; OR 0.56, 95% CI 0.31-0.99; rs3733230; OR 0.62, 95% CI 0.34-1.12) of HCC, which may work as a prevention of HCC. At least one minor allele carrier of SCD5 gene polymorphisms were related to decreased risk of HCC for AFP cut-point levels > 200 or > 400 ng/ml, respectively. Our results indicate that polymorphisms in the 3'-UTR of the SCD5 gene may associated with HCC in the Korean male population.

Indexed as

3' Untranslated RegionsAdultAgedAllelesAsian PeopleCarcinoma, HepatocellularCase-Control StudiesGene FrequencyGenetic Predisposition to DiseaseGenotypeHumansLiver NeoplasmsMaleMatrix Metalloproteinase 1Middle AgedPolymorphism, Single Nucleotide3' Untranslated RegionsMatrix Metalloproteinase 1MMP1 protein, humanSCD5 protein, humanStearoyl-CoA DesaturaseAFPHepatocellular carcinomaMatrix metalloproteinase 1PolymorphismsStearoyl-CoA desaturase 5

Identifiers

PMID30168096
OpenAlexW2888941681

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.