Evidence map›Paper›PMID 30166628›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

De novo truncating variants in the intronless IRF2BPL are responsible for developmental epileptic encephalopathy.

F Tran Mau-Them, L Guibaud, L Duplomb, B Keren, K Lindstrom, I Marey, F Mochel, M J van den Boogaard, R Oegema, C Nava and 28 more

Registry-linked trialOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03892798 (Database Of Clinical Data For Individuals With Variants In The IRF2BPL Gene), which is not on this map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03892798 completednot on this map

Database Of Clinical Data For Individuals With Variants In The IRF2BPL Gene

Typeobservational_patient_registrySponsorChildren's Hospital Medical Center, CincinnatiRan2018 to 2024Enrolled34ConditionsAutism Spectrum Disorder, Movement Disorders, Seizures, DystoniaArmsNo interventions are planned
3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 59 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Disorders of puberty and neurodevelopment: A shared etiology?Annals of the New York Academy of Sciences · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Science advances · 2023
    Article
  11. Neurology. Genetics · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors at 8 institutions in 5 countries.

F Tran Mau-ThemUF Innovation en diagnostic genomique des maladies rares, CHU Dijon Bourgogne, Dijon, France. frederic.tran-mau-them@u-bourgogne.fr.
L GuibaudUniversite Claude Bernard Lyon I, CHU de Lyon, Lyon, France.
L DuplombINSERM UMR1231 GAD, F-21000, Dijon, France.
B KerenDepartement de Genetique, Hopital Pitie-Salpetriere, Paris, France.
K LindstromDivision of Genetics and Metabolic Phoenix Children's Hospital, Phoenix, Arizona, USA.
I MareyDepartement de Genetique, Hopital Pitie-Salpetriere, Paris, France.
F MochelDepartement de Genetique, Hopital Pitie-Salpetriere, Paris, France.
M J van den BoogaardDepartment of Genetics, University Medical Center, Utrecht, The Netherlands.
R OegemaDepartment of Genetics, University Medical Center, Utrecht, The Netherlands.
C NavaDepartement de Genetique, Hopital Pitie-Salpetriere, Paris, France.
A MasurelCentre de Reference maladies rares « Anomalies du Developpement et syndrome malformatifs » de l'Est, Centre de Genetique, Hopital d'Enfants, FHU TRANSLAD, CHU Dijon Bourgogne, Dijon, France.
T JouanUF Innovation en diagnostic genomique des maladies rares, CHU Dijon Bourgogne, Dijon, France.
F E JansenDepartment of Child Neurology, Brain Center Rudolf Magnus, University Medical Center, Utrecht, The Netherlands.
M AuDepartment of Pediatrics, Division of Medical Genetics, Cedars-Sinai Medical Center and Harbor-UCLA Medical Center, Los Angeles, California, USA.
Agnes H ChenDivision of Pediatric Neurology, Department of Pediatrics, Harbor-UCLA Medical Center, Los Angeles, California, USA.
M ChoGeneDx, Gaithersburg, Maryland, USA.
Y DuffourdINSERM UMR1231 GAD, F-21000, Dijon, France.
E LozierGenomed Ltd., Moscow, Russia.
F KonovalovGenomed Ltd., Moscow, Russia.
A SharkovGenomed Ltd., Moscow, Russia.
S KorostelevGenomed Ltd., Moscow, Russia.
B UrteagaINSERM UMR1231 GAD, F-21000, Dijon, France.
P DicksonDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Torrance, California, USA.
M VeraDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Torrance, California, USA.
Julián A Martínez-AgostoDepartments of Human Genetics and Psychiatry, David Geffen School of Medicine at UCLA, Los Angeles, California, USA.
A BegemannInstitute of Medical Genetics, University of Zurich, Schlieren, Zurich, Switzerland.
M ZweierInstitute of Medical Genetics, University of Zurich, Schlieren, Zurich, Switzerland.
T Schmitt-MechelkeDivision of Pediatric Neurology, Children's Hospital, Lucerne, Switzerland.
A RauchInstitute of Medical Genetics, University of Zurich, Schlieren, Zurich, Switzerland.
C PhilippeUF Innovation en diagnostic genomique des maladies rares, CHU Dijon Bourgogne, Dijon, France.
K van GassenDepartment of Genetics, University Medical Center, Utrecht, The Netherlands.
S NelsonDepartments of Human Genetics and Psychiatry, David Geffen School of Medicine at UCLA, Los Angeles, California, USA.
J M GrahamDepartment of Pediatrics, Division of Medical Genetics, Cedars-Sinai Medical Center and Harbor-UCLA Medical Center, Los Angeles, California, USA.
J FriedmanDepartment of Neurosciences and Pediatrics UCSD/Rady Children's Hospital San Diego, Rady Children's Institute for Genomic Medicine, San Diego, California, USA.
L FaivreINSERM UMR1231 GAD, F-21000, Dijon, France.
H J LinDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center, Torrance, California, USA.
C Thauvin-RobinetUF Innovation en diagnostic genomique des maladies rares, CHU Dijon Bourgogne, Dijon, France.
A VitobelloUF Innovation en diagnostic genomique des maladies rares, CHU Dijon Bourgogne, Dijon, France. antonio.vitobello@u-bourgogne.fr.
Inserm · FRUniversity Medical Center Utrecht · NLUniversity of Zurich · CHUCLA Medical Center · USHarbor–UCLA Medical Center · USPirogov Russian National Research Medical University · RURady Children's Hospital-San Diego · USUniversity of Teacher Education Lucerne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeDevelopmental and epileptic encephalopathies (DEEs) are severe clinical conditions characterized by stagnation or decline of cognitive and behavioral abilities preceded, accompanied or followed by seizures. Because DEEs are clinically and genetically heterogeneous, next-generation sequencing, especially exome sequencing (ES), is becoming a first-tier strategy to identify the molecular etiologies of these disorders.

methodsWe combined ES analysis and international data sharing.

resultsWe identified 11 unrelated individuals with DEE and de novo heterozygous truncating variants in the interferon regulatory factor 2-binding protein-like gene (IRF2BPL). The 11 individuals allowed for delineation of a consistent neurodevelopmental disorder characterized by mostly normal initial psychomotor development followed by severe global neurological regression and epilepsy with nonspecific electroencephalogram (EEG) abnormalities and variable central nervous system (CNS) anomalies. IRF2BPL, also known as enhanced at puberty protein 1 (EAP1), encodes a transcriptional regulator containing a C-terminal RING-finger domain common to E3 ubiquitin ligases. This domain is required for its repressive and transactivating transcriptional properties. The variants identified are expected to encode a protein lacking the C-terminal RING-finger domain.

conclusionsThese data support the causative role of truncating IRF2BPL variants in pediatric neurodegeneration and expand the spectrum of transcriptional regulators identified as molecular factors implicated in genetic developmental and epileptic encephalopathies.

Indexed as

AdolescentAdultCarrier ProteinsCentral Nervous SystemChildElectroencephalographyEpilepsyExome SequencingFemaleHeterozygoteHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedMutationNeurodevelopmental DisordersCarrier ProteinsIRF2BPL protein, humanNuclear Proteinsdata sharingdevelopmental epileptic encephalopathiesexome sequencingIRF2BPL

Identifiers

PMID30166628
OpenAlexW2888858494

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.