Evidence map›Paper›PMID 30166556›Full record

ArticleScientific reports2018

Multiple polymerase gene mutations for human adaptation occurring in Asian H5N1 influenza virus clinical isolates.

Yasuha Arai, Norihito Kawashita, Kozue Hotta, Phuong Vu Mai Hoang, Hang Le Khanh Nguyen, Thach Co Nguyen, Cuong Duc Vuong, Thanh Thi Le, Mai Thi Quynh Le, Kosuke Soda and 8 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Yasuha AraiDepartment of Infectious Diseases, Graduate School of Medical Sciences, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Norihito KawashitaGraduate School of Science and Engineering, Kindai University, Osaka, Japan.
Kozue HottaVietnam Research Station, Center for Infectious Disease Research in Asia and Africa, Institute of Tropical Medicine, Nagasaki University, Hanoi, Vietnam.
Phuong Vu Mai HoangDepartment of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Hang Le Khanh NguyenDepartment of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Thach Co NguyenDepartment of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Cuong Duc VuongDepartment of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Thanh Thi LeDepartment of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Mai Thi Quynh LeDepartment of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Kosuke SodaAvian Zoonosis Research Center, Faculty of Agriculture, Tottori University, Tottori, Japan.
Madiha S IbrahimDepartment of Microbiology and Immunology, Faculty of Veterinary Medicine, Damanhour University, Damanhour, Egypt.
Tomo DaidojiDepartment of Infectious Diseases, Graduate School of Medical Sciences, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Tatsuya TakagiGraduate School of Pharmaceutical Science, Osaka University, Osaka, Japan.
Tatsuo ShiodaDepartment of Viral Infections, Research Institute for Microbial Diseases, Osaka University, Osaka, Japan.
Takaaki NakayaDepartment of Infectious Diseases, Graduate School of Medical Sciences, Kyoto Prefectural University of Medicine, Kyoto, Japan.
Toshihiro ItoAvian Zoonosis Research Center, Faculty of Agriculture, Tottori University, Tottori, Japan.
Futoshi HasebeVietnam Research Station, Center for Infectious Disease Research in Asia and Africa, Institute of Tropical Medicine, Nagasaki University, Hanoi, Vietnam.
Yohei WatanabeDepartment of Infectious Diseases, Graduate School of Medical Sciences, Kyoto Prefectural University of Medicine, Kyoto, Japan. nabe@koto.kpu-m.ac.jp.
National Institute Of Hygiene And Epidemiology · VNOsaka University · JPKyoto Prefectural University of Medicine · JPTottori University · JPDamanhour University · EGVeterinary Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The role of the influenza virus polymerase complex in host range restriction has been well-studied and several host range determinants, such as the polymerase PB2-E627K and PB2-D701N mutations, have been identified. However, there may be additional, currently unknown, human adaptation polymerase mutations. Here, we used a database search of influenza virus H5N1 clade 1.1, clade 2.3.2.1 and clade 2.3.4 strains isolated from 2008-2012 in Southern China, Vietnam and Cambodia to identify polymerase adaptation mutations that had been selected in infected patients. Several of these mutations acted either alone or together to increase viral polymerase activity in human airway cells to levels similar to the PB2-D701N and PB2-E627K single mutations and to increase progeny virus yields in infected mouse lungs to levels similar to the PB2-D701N single mutation. In particular, specific mutations acted synergistically with the PB2-D701N mutation and showed synergistic effects on viral replication both in human airway cells and mice compared with the corresponding single mutations. Thus, H5N1 viruses in infected patients were able to acquire multiple polymerase mutations that acted cooperatively for human adaptation. Our findings give new insight into the human adaptation of AI viruses and help in avian influenza virus risk assessment.

Indexed as

A549 CellsAdaptation, PhysiologicalAnimalsAsiaBirdsDNA-Directed RNA PolymerasesEpithelial CellsHEK293 CellsHumansInfluenza A Virus, H5N1 SubtypeLungMiceModels, MolecularMutationVirus ReplicationDNA-Directed RNA Polymerases

Identifiers

PMID30166556
PMCPMC6117316
OpenAlexW2888539004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.