Evidence map›Paper›PMID 30166553›Full record

ArticleNature communications2018

Loss-of-function mutations in ATP6AP1 and ATP6AP2 in granular cell tumors.

Fresia Pareja, Alissa H Brandes, Thais Basili, Pier Selenica, Felipe C Geyer, Dan Fan, Arnaud Da Cruz Paula, Rahul Kumar, David N Brown, Rodrigo Gularte-Mérida and 23 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it, 140 citations in OpenAlex.

  1. Pooled it
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  11. Vacuolar-type HNature communications · 2025
    Article
  12. Article
  13. Article
  14. Hybrid granular cell tumor/perineurioma: a report of two rare cases with PIK3CA mutations.Virchows Archiv : an international journal of pathology · 2025
    Article
  15. Pathogenic variants inmedRxiv : the preprint server for health sciences · 2025
    Article
  16. Article
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  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 6 institutions in 4 countries.

Fresia ParejaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Alissa H BrandesDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Thais BasiliDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Pier SelenicaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Felipe C GeyerDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Dan FanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Arnaud Da Cruz PaulaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Rahul KumarDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
David N BrownDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Rodrigo Gularte-MéridaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Barbara AlemarDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Rui BiDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Raymond S LimDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Ino de BruijnDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Sho FujisawaMolecular Cytology Core Facility, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Rui GardnerFlow Cytometry Core Facility, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Elvin FengMolecular Cytology Core Facility, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Anqi LiDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Edaise M da SilvaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
John R LozadaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.ORCID http://orcid.org/0000-0001-8953-4110
Pedro BlecuaDepartment of Radiation Oncology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Leona Cohen-GouldDepartment of Biochemistry, Weill Cornell Medical College, New York, 10065, NY, USA.
Achim A JungbluthDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Emad A RakhaDepartment of Pathology, University of Nottingham, Nottingham, NG7 2RD, UK.
Ian O EllisDepartment of Pathology, University of Nottingham, Nottingham, NG7 2RD, UK.
Maria I A EdelweissHospital de Clínicas, Federal University of Rio Grande do Sul, Porto Alegre, 90035-903, Brazil.
Juan PalazzoDepartment of Pathology, Jefferson Medical College, Philadelphia, 19107, PA, USA.
Larry NortonDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Travis HollmannDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Marcia EdelweissDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA.
Brian P RubinDepartments of Pathology and Cancer Biology, Robert J. Tomsich Pathology and Laboratory Medicine Institute and The Lerner Research Institute, Cleveland Clinic, Cleveland, 44195, OH, USA.
Britta WeigeltDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA. weigeltb@mskcc.org.
Jorge S Reis-FilhoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, 10065, NY, USA. reisfilj@mskcc.org.
Memorial Sloan Kettering Cancer Center · USUniversidade Federal do Rio Grande do Sul · BRUniversity of Nottingham · GBCleveland Clinic Lerner College of Medicine · USCornell University · USJefferson College · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
A JEM 1400 Electron Microscope for a Core FacilityS10RR027699 · NCRR · WEILL MEDICAL COLL OF CORNELL UNIV · PI MAXFIELD, FREDERICK R. · 2010 to 2010
$378k
NCI NIH HHS P30 CA008748NCRR NIH HHS S10 RR027699
6 · The paper itself

Abstract

Granular cell tumors (GCTs) are rare tumors that can arise in multiple anatomical locations, and are characterized by abundant intracytoplasmic granules. The genetic drivers of GCTs are currently unknown. Here, we apply whole-exome sequencing and targeted sequencing analysis to reveal mutually exclusive, clonal, inactivating somatic mutations in the endosomal pH regulators ATP6AP1 or ATP6AP2 in 72% of GCTs. Silencing of these genes in vitro results in impaired vesicle acidification, redistribution of endosomal compartments, and accumulation of intracytoplasmic granules, recapitulating the cardinal phenotypic characteristics of GCTs and providing a novel genotypic-phenotypic correlation. In addition, depletion of ATP6AP1 or ATP6AP2 results in the acquisition of oncogenic properties. Our results demonstrate that inactivating mutations of ATP6AP1 and ATP6AP2 are likely oncogenic drivers of GCTs and underpin the genesis of the intracytoplasmic granules that characterize them, providing a genetic link between endosomal pH regulation and tumorigenesis.

Indexed as

Cell ProliferationExomeFemaleFlow CytometryGenetic Association StudiesGranular Cell TumorHEK293 CellsHumansMaleMutationProrenin ReceptorReceptors, Cell SurfaceVacuolar Proton-Translocating ATPasesATP6AP1 protein, humanATP6AP2 protein, humanProrenin ReceptorReceptors, Cell SurfaceVacuolar Proton-Translocating ATPases

Identifiers

PMID30166553
PMCPMC6117336
OpenAlexW2888149804

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.