Evidence map›Paper›PMID 30166336›Full record

ArticleEMBO reports2018

Sequentially acting SOX proteins orchestrate astrocyte- and oligodendrocyte-specific gene expression.

Susanne Klum, Cécile Zaouter, Zhanna Alekseenko, Åsa K Björklund, Daniel W Hagey, Johan Ericson, Jonas Muhr, Maria Bergsland

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 53 citations in OpenAlex.

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  15. The epigenetic landscape of oligodendrocyte lineage cells.Annals of the New York Academy of Sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Susanne KlumLudwig Institute for Cancer Research, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0003-1316-2175
Cécile ZaouterLudwig Institute for Cancer Research, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-0359-4866
Zhanna AlekseenkoDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0002-6560-9699
Åsa K BjörklundNational Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden.ORCID 0000-0003-2224-7090
Daniel W HageyLudwig Institute for Cancer Research, Karolinska Institutet, Stockholm, Sweden.
Johan EricsonDepartment of Cell and Molecular Biology, Karolinska Institutet, Stockholm, Sweden.
Jonas MuhrLudwig Institute for Cancer Research, Karolinska Institutet, Stockholm, Sweden jonas.muhr@ki.se maria.bergsland@ki.se.ORCID 0000-0003-0704-0788
Maria BergslandLudwig Institute for Cancer Research, Karolinska Institutet, Stockholm, Sweden jonas.muhr@ki.se maria.bergsland@ki.se.ORCID 0000-0003-2720-388X
Karolinska Institutet · SEUppsala University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SOX transcription factors have important roles during astrocyte and oligodendrocyte development, but how glial genes are specified and activated in a sub-lineage-specific fashion remains unknown. Here, we define glial-specific gene expression in the developing spinal cord using single-cell RNA-sequencing. Moreover, by ChIP-seq analyses we show that these glial gene sets are extensively preselected already in multipotent neural precursor cells through prebinding by SOX3. In the subsequent lineage-restricted glial precursor cells, astrocyte genes become additionally targeted by SOX9 at DNA regions strongly enriched for Nfi binding motifs. Oligodendrocyte genes instead are prebound by SOX9 only, at sites which during oligodendrocyte maturation are targeted by SOX10. Interestingly, reporter gene assays and functional studies in the spinal cord reveal that SOX3 binding represses the synergistic activation of astrocyte genes by SOX9 and NFIA, whereas oligodendrocyte genes are activated in a combinatorial manner by SOX9 and SOX10. These genome-wide studies demonstrate how sequentially expressed SOX proteins act on lineage-specific regulatory DNA elements to coordinate glial gene expression both in a temporal and in a sub-lineage-specific fashion.

Indexed as

AnimalsAstrocytesCell DifferentiationEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalMiceNeural Stem CellsNeurogliaOligodendrogliaSOX9 Transcription FactorSOXB1 Transcription FactorsSpinal CordSox3 protein, mouseSox9 protein, mouseSOX9 Transcription FactorSOXB1 Transcription FactorsChIP‐seqgliogenesisprebindingsingle‐cell RNA‐sequencingSOX proteins

Identifiers

PMID30166336
PMCPMC6216240
OpenAlexW2889244889

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.