Evidence map›Paper›PMID 30165630›Full record

ArticleGenome biology and evolution2018

The Structure of a Conserved Telomeric Region Associated with Variant Antigen Loci in the Blood Parasite Trypanosoma congolense.

Ali Hadi Abbas, Sara Silva Pereira, Simon D'Archivio, Bill Wickstead, Liam J Morrison, Neil Hall, Christiane Hertz-Fowler, Alistair C Darby, Andrew P Jackson

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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  7. Review
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  12. African trypanosomes.Parasites & vectors · 2019
    Article
  13. Article
  14. Evolution of Antigenic Variation in African Trypanosomes: Variant Surface Glycoprotein Expression, Structure, and Function.BioEssays : news and reviews in molecular, cellular and developmental biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Ali Hadi AbbasCentre for Genomic Research, Biosciences Building, Liverpool, United Kingdom.
Sara Silva PereiraDepartment of Infection Biology, Institute of Infection and Global Health, University of Liverpool, United Kingdom.
Simon D'ArchivioSchool of Life Sciences, University of Nottingham, United Kingdom.
Bill WicksteadSchool of Life Sciences, University of Nottingham, United Kingdom.
Liam J MorrisonDepartment of Infection and Immunity, The Roslin Institute, Easter Bush, Edinburgh, United Kingdom.
Neil HallEarlham Institute, Norwich Research Park, Norwich, United Kingdom.
Christiane Hertz-FowlerCentre for Genomic Research, Biosciences Building, Liverpool, United Kingdom.
Alistair C DarbyCentre for Genomic Research, Biosciences Building, Liverpool, United Kingdom.
Andrew P JacksonDepartment of Infection Biology, Institute of Infection and Global Health, University of Liverpool, United Kingdom.
University of Liverpool · GBUniversity of Nottingham · GBNorwich Research Park · GBRoslin Institute · GBUniversity of Kufa · IQ

Funding

Biotechnology and Biological Sciences Research Council BB/J01477X/1Biotechnology and Biological Sciences Research Council BB/M022811/1Medical Research Council MR/K002279/1
6 · The paper itself

Abstract

African trypanosomiasis is a vector-borne disease of humans and livestock caused by African trypanosomes (Trypanosoma spp.). Survival in the vertebrate bloodstream depends on antigenic variation of Variant Surface Glycoproteins (VSGs) coating the parasite surface. In T. brucei, a model for antigenic variation, monoallelic VSG expression originates from dedicated VSG expression sites (VES). Trypanosoma brucei VES have a conserved structure consisting of a telomeric VSG locus downstream of unique, repeat sequences, and an independent promoter. Additional protein-coding sequences, known as "Expression Site Associated Genes (ESAGs)", are also often present and are implicated in diverse, bloodstream-stage functions. Trypanosoma congolense is a related veterinary pathogen, also displaying VSG-mediated antigenic variation. A T. congolense VES has not been described, making it unclear if regulation of VSG expression is conserved between species. Here, we describe a conserved telomeric region associated with VSG loci from long-read DNA sequencing of two T. congolense strains, which consists of a distal repeat, conserved noncoding elements and other genes besides the VSG; although these are not orthologous to T. brucei ESAGs. Most conserved telomeric regions are associated with accessory minichromosomes, but the same structure may also be associated with megabase chromosomes. We propose that this region represents the T. congolense VES, and through comparison with T. brucei, we discuss the parallel evolution of antigenic switching mechanisms, and unique adaptation of the T. brucei VES for developmental regulation of bloodstream-stage genes. Hence, we provide a basis for understanding antigenic switching in T. congolense and the origins of the African trypanosome VES.

Indexed as

Antigenic VariationAnimalsBase SequenceConserved SequenceDNA, ProtozoanEvolution, MolecularGenes, ProtozoanPhylogenyProtozoan ProteinsSequence AlignmentTelomereTrypanosoma congolenseTrypanosomiasis, AfricanVariant Surface Glycoproteins, TrypanosomaDNA, ProtozoanProtozoan ProteinsVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID30165630
PMCPMC6152948
OpenAlexW2888336512

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.