Evidence map›Paper›PMID 30165440›Full record

ArticleGigaScience2018

Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data.

Sascha Herzinger, Valentin Grouès, Wei Gu, Venkata Satagopam, Peter Banda, Christophe Trefois, Reinhard Schneider

Abstract read
In one paragraph

Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sascha HerzingerLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.
Valentin GrouèsLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.
Wei GuLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.
Venkata SatagopamLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.
Peter BandaLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.
Christophe TrefoisLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.
Reinhard SchneiderLuxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Translational research platforms share the aim of promoting a deeper understanding of stored data by providing visualization and analysis tools for data exploration and hypothesis generation. However, such tools are usually platform bound and are not easily reusable by other systems. Furthermore, they rarely address access restriction issues when direct data transfer is not permitted. In this article, we present an analytical service that works in tandem with a visualization library to address these problems. Findings: Using a combination of existing technologies and a platform-specific data abstraction layer, we developed a service that is capable of providing existing web-based data warehouses and repositories with platform-independent visual analytical capabilities. The design of this service also allows for federated data analysis by eliminating the need to move the data directly to the researcher. Instead, all operations are based on statistics and interactive charts without direct access to the dataset. Conclusions: The software presented in this article has a potential to help translational researchers achieve a better understanding of a given dataset and quickly generate new hypotheses. Furthermore, it provides a framework that can be used to share and reuse explorative analysis tools within the community.

Indexed as

Databases, FactualSoftwareElectronic Data ProcessingTranslational Research, Biomedical

Identifiers

PMID30165440
PMCPMC6143733

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.