Evidence map›Paper›PMID 30165396›Full record

ArticleBioinformatics (Oxford, England)2019

MOLGENIS research: advanced bioinformatics data software for non-bioinformaticians.

K Joeri van der Velde, Floris Imhann, Bart Charbon, Chao Pang, David van Enckevort, Mariska Slofstra, Ruggero Barbieri, Rudi Alberts, Dennis Hendriksen, Fleur Kelpin and 9 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Bioinformatics (Oxford, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  11. Brain donation rules in Italy and worldwide: overview of a cutting-edge topic for human brain research.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Review
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  14. [Causal association between gut microbiota and food allergy: a Mendelian randomization analysis].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

K Joeri van der VeldeGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Floris ImhannDepartment of Genetics, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Bart CharbonGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Chao PangGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
David van EnckevortGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Mariska SlofstraGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Ruggero BarbieriDepartment of Genetics, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Rudi AlbertsDepartment of Genetics, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Dennis HendriksenGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Fleur KelpinGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Mark de HaanGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Tommy de BoerGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Sido HaakmaGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Connor StroombergGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Salome ScholtensGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Gert-Jan van de GeijnGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Eleonora A M FestenDepartment of Genetics, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Rinse K WeersmaDepartment of Gastroenterology and Hepatology, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.
Morris A SwertzGenomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

motivationThe volume and complexity of biological data increases rapidly. Many clinical professionals and biomedical researchers without a bioinformatics background are generating big '-omics' data, but do not always have the tools to manage, process or publicly share these data.

resultsHere we present MOLGENIS Research, an open-source web-application to collect, manage, analyze, visualize and share large and complex biomedical datasets, without the need for advanced bioinformatics skills. AVAILABILITY AND IMPLEMENTATION: MOLGENIS Research is freely available (open source software). It can be installed from source code (see http://github.com/molgenis), downloaded as a precompiled WAR file (for your own server), setup inside a Docker container (see http://molgenis.github.io), or requested as a Software-as-a-Service subscription. For a public demo instance and complete installation instructions see http://molgenis.org/research.

Indexed as

Computational BiologySoftwareAlgorithmsGenomeGenomics

Identifiers

PMID30165396
PMCPMC6419911

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.