Evidence map›Paper›PMID 30165376›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2019

Persistence of Nasopharyngeal Pneumococcal Vaccine Serotypes and Increase of Nonvaccine Serotypes Among Vaccinated Infants and Their Mothers 5 Years After Introduction of Pneumococcal Conjugate Vaccine 13 in The Gambia.

Effua Usuf, Christian Bottomley, Ebrima Bojang, Isatou Cox, Abdoulie Bojang, Rebecca Gladstone, Beate Kampmann, Philip C Hill, Anna Roca

Open access · hybridAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Early-life carriage and antibiotic resistance ofFrontiers in microbiology · 2026
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  13. Streptococcus pneumoniae and other bacterial nasopharyngeal colonization seven years post-introduction of 13-valent pneumococcal conjugate vaccine in South African children.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Effua UsufMedical Research Council Unit-The Gambia at the London School of Hygiene and Tropical Medicine, Fajara.
Christian BottomleyDepartment of Infectious Disease Epidemiology, London School of Hygiene and Tropical Medicine, United Kingdom.
Ebrima BojangMedical Research Council Unit-The Gambia at the London School of Hygiene and Tropical Medicine, Fajara.
Isatou CoxMedical Research Council Unit-The Gambia at the London School of Hygiene and Tropical Medicine, Fajara.
Abdoulie BojangMedical Research Council Unit-The Gambia at the London School of Hygiene and Tropical Medicine, Fajara.
Rebecca GladstoneSanger Institute, Wellcome Trust, Pathogen Genomics, Cambridge, United Kingdom.
Beate KampmannMedical Research Council Unit-The Gambia at the London School of Hygiene and Tropical Medicine, Fajara.
Philip C HillCentre for International Health, University of Otago, Otago, New Zealand.
Anna RocaMedical Research Council Unit-The Gambia at the London School of Hygiene and Tropical Medicine, Fajara.
MRC Unit the Gambia · GMLondon School of Hygiene & Tropical Medicine · GBUniversity of Otago · NZWellcome Sanger Institute · GB

Funding

Medical Research Council MC_U190085849Medical Research Council MR/K012126/1
6 · The paper itself

Abstract

backgroundThe widespread use of pneumococcal conjugate vaccine (PCV) has brought about a dramatic decrease in pneumococci of vaccine serotypes (VTs) but nonvaccine serotypes (NVTs) have emerged.

methodsWe conducted a cross-sectional survey (CSS) among infants who received 3 doses of 13-valent PCV (PCV13) and their mothers 5 years (CSS3) after PCV13 introduction. Nasopharyngeal swab samples were collected and cultured for isolation of Streptococcus pneumoniae. Whole-genome sequencing of the nontypeable strains was performed. Data were compared with those from 2 previous surveys conducted before PCV13 introduction (CSS1) and 1 year later (CSS2).

resultsAmong infants, VT carriage decreased from 33.3% (113/339) in CSS1 to 11.4% (40/351) in CSS3 (P = .001) while NVTs increased from 53.1% (180/339) in CSS1 to 74.4% (261/351) in CSS3 (P < .001). Among mothers, there was a significant decrease in VTs between CSS2 8.4% (29/347) and CSS3 5.6% (19/342) (P = .006). NVTs increased from 16.6% (55/331) in CSS1 to 32.2% (110/342) in CSS3 (P < .001). In CSS3, the most prevalent VTs were 7F in infants and 3 in mothers, and the most prevalent NVTs were serogroup 16 and nontypeables, respectively. Genomic analysis showed that VTs were more likely than NVTs to lose their ability to express the capsule.

conclusionsFive years after PCV13 introduction, we show both direct (infants) and indirect effects (mothers) of the vaccine, while NVT replacement has occurred in both groups. Ongoing circulation of VTs warrants further study of their relevance in any consideration of a reduced dose schedule.

Indexed as

SerogroupAdultCross-Sectional StudiesFemaleHumansImmunity, HerdInfantMaleMothersNasopharynxPneumococcal VaccinesPneumonia, PneumococcalStreptococcus pneumoniaeVaccinationWhole Genome Sequencing13-valent pneumococcal vaccinePneumococcal Vaccinesherd-effectnontypeablepneumococcal carriageserotypes

Identifiers

PMID30165376
PMCPMC6481996
OpenAlexW2888187799

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.