Evidence map›Paper›PMID 30160483›Full record

ArticleJournal of proteome research2018

Trace Phosphate Improves ZIC-pHILIC Peak Shape, Sensitivity, and Coverage for Untargeted Metabolomics.

Jonathan L Spalding, Fuad J Naser, Nathaniel G Mahieu, Stephen L Johnson, Gary J Patti

Abstract read
In one paragraph

Article in Journal of proteome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  4. Review
  5. Article
  6. Article
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  8. Article
  9. 1,2-Current issues in molecular biology · 2023
    Article
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  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Chemical Discovery in the Era of Metabolomics.Journal of the American Chemical Society · 2020
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jonathan L SpaldingDepartment of Chemistry , Washington University in St. Louis , St. Louis , MO 63130 , United States.ORCID 0000-0001-8789-9706
Fuad J NaserDepartment of Chemistry , Washington University in St. Louis , St. Louis , MO 63130 , United States.ORCID 0000-0002-7769-6769
Nathaniel G MahieuDepartment of Chemistry , Washington University in St. Louis , St. Louis , MO 63130 , United States.ORCID 0000-0002-0469-9934
Stephen L JohnsonDepartment of Genetics , Washington University in St. Louis , St. Louis , MO 63110 , United States.
Gary J PattiDepartment of Chemistry , Washington University in St. Louis , St. Louis , MO 63130 , United States.ORCID 0000-0002-3748-6193

Funding

TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
Developing Metabolomic Technologies to Advance Environmental Exposure AnalysisR35ES028365 · NIEHS · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2017 to 2024
$5.9M
DEVELOPING THE UNTARGETED METABOLOMIC WORKFLOW FOR HIGH-THROUGHPUT ANALYSESR01ES022181 · NIEHS · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2012 to 2016
$1.8M
CELL-SPECIFIC ISOTOPE LABELING TO TRACK INTERCELLULAR METABOLITE EXCHANGE IN CANCERR21CA191097 · NCI · WASHINGTON UNIVERSITY · PI PATTI, GARY J · 2015 to 2017
$663k
NCI NIH HHS R21 CA191097NIEHS NIH HHS R01 ES022181NIEHS NIH HHS R35 ES028365NIGMS NIH HHS T32 GM007067
6 · The paper itself

Abstract

Existing hydrophilic interaction liquid chromatography (HILIC) methods, considered individually, each exhibit poor chromatographic performance for a substantial fraction of polar metabolites. In addition to limiting metabolome coverage, such deficiencies also complicate automated data processing. Here we show that some of these analytical challenges can be addressed for the ZIC-pHILIC, a zwitterionic stationary phase commonly used in metabolomics, with the addition of trace levels of phosphate. Specifically, micromolar phosphate extended metabolome coverage by hundreds of credentialed features, improved peak shapes, and reduced peak-detection errors during informatic processing. Although the addition of high levels of phosphate (millimolar) as a HILIC mobile phase buffer has been explored previously, such concentrations interfere with mass spectrometric (MS) detection. We show that using phosphate as a trace additive at micromolar concentrations improves analysis by electrospray MS, increasing signal for a diverse set of polar standards. Given the small amount of phosphate needed, comparable chromatographic improvements were also achieved by direct addition of phosphate to the sample during reconstitution. Our results suggest that defects in ZIC-pHILIC performance are predominantly driven by electrostatic interactions, which can be modulated by phosphate. These findings constitute both a methodological improvement for untargeted metabolomics and an advance in our understanding of the mechanisms limiting HILIC coverage.

Indexed as

MetabolomeChromatography, LiquidHydrophobic and Hydrophilic InteractionsMass SpectrometryMetabolomicsPhosphatesReproducibility of ResultsStatic ElectricityPhosphatesbioinformaticscoveragecredentialingelectrostatic interactionshydrophilic interaction liquid chromatographypeak detectionphosphateuntargeted metabolomics

Identifiers

PMID30160483
PMCPMC6427830

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.