Evidence map›Paper›PMID 30160354›Full record

ArticleMolecular plant pathology2019

Mediator of tolerance to abiotic stress ERF6 regulates susceptibility of Arabidopsis to Meloidogyne incognita.

Sonja Warmerdam, Mark G Sterken, Casper Van Schaik, Marian E P Oortwijn, Jose L Lozano-Torres, Jaap Bakker, Aska Goverse, Geert Smant

Open access · hybridAbstract read
In one paragraph

Article in Molecular plant pathology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Karrikin Improves Osmotic and Salt Stress ToleranceFrontiers in plant science · 2020
    Article
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  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sonja WarmerdamLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.ORCID 0000-0001-5213-8026
Mark G SterkenLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Casper Van SchaikLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Marian E P OortwijnPlant Breeding, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Jose L Lozano-TorresLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Jaap BakkerLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Aska GoverseLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Geert SmantLaboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, the Netherlands.
Wageningen University & Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root-knot nematodes transform vascular host cells into permanent feeding structures to selectively withdraw their nutrients from host plants during the course of several weeks. The susceptibility of host plants to root-knot nematode infections is thought to be a complex trait involving many genetic loci. However, genome-wide association (GWA) analysis has so far revealed only four quantitative trait loci (QTLs) linked to the reproductive success of the root-knot nematode Meloidogyne incognita in Arabidopsis thaliana, which suggests that the genetic architecture underlying host susceptibility could be much simpler than previously thought. Here, we report that, by using a relaxed stringency approach in a GWA analysis, we could identify 15 additional loci linked to quantitative variation in the reproductive success of M. incognita in Arabidopsis. To test the robustness of our analysis, we functionally characterized six genes located in a QTL with the lowest acceptable statistical support and smallest effect size. This led us to identify ETHYLENE RESPONSE FACTOR 6 (ERF6) as a novel susceptibility gene for M. incognita in Arabidopsis. ERF6 functions as a transcriptional activator and suppressor of genes in response to various abiotic stresses independent of ethylene signalling. However, whole-transcriptome analysis of nematode-infected roots of the Arabidopsis erf6-1 knockout mutant line showed that allelic variation at this locus may regulate the conversion of aminocyclopropane-1-carboxylate (ACC) into ethylene by altering the expression of 1-aminocyclopropane-1-carboxylate oxidase 3 (ACO3). Our data further suggest that tolerance to abiotic stress mediated by ERF6 forms a novel layer of control in the susceptibility of Arabidopsis to M. incognita.

Indexed as

Adaptation, PhysiologicalAnimalsArabidopsisArabidopsis ProteinsBiosynthetic PathwaysEthylenesGene Expression Regulation, PlantGenome, PlantPlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociStress, PhysiologicalTranscription FactorsTylenchoideaArabidopsis ProteinsERF6 protein, ArabidopsisEthylenesTranscription Factorsabiotic stressArabidopsis thalianaERF6genome-wide association mappingMeloidogyne incognitaroot-knot nematodestranscription factor

Identifiers

PMID30160354
PMCPMC6430479
OpenAlexW2905705940

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.