ArticleRice (New York, N.Y.)2018
Genome-wide analysis of root hair-preferential genes in rice.
Article in Rice (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
What it found
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Who cites it
8 citing papers in PubMed.
- Root‑preferential OsPUB36 modulates ROS levels and regulates root development.Plant cell reports · 2025Article
- PRX102 Participates in Root Hairs Tip Growth of Rice.Rice (New York, N.Y.) · 2023Article
- Article
- Genome wide association analysis of root hair traits in rice reveals novel genomic regions controlling epidermal cell differentiation.BMC plant biology · 2023Article
- Root hair-specific transcriptome reveals response to low phosphorus inFrontiers in plant science · 2022Article
- Fast Track to Discover Novel Promoters in Rice.Plants (Basel, Switzerland) · 2020Article
- Insights Into the Regulation of the Expression Pattern of Calvin-Benson-Bassham Cycle Enzymes in CFrontiers in plant science · 2020Article
- RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate Root Hair Development.Plant physiology · 2019Article
Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
backgroundRoot hairs are valuable in taking up nutrients and water from the rhizosphere and serving as sites of interactions with soil microorganisms. By increasing the external surface area of the roots or interacting with rhizobacteria, root hairs directly and indirectly promote plant growth and yield. Transcriptome data can be used to understand root-hair development in rice.
resultWe performed Agilent 44 K microarray experiments with enriched root-hair samples and identified 409 root hair-preferential genes in rice. The expression patterns of six genes were confirmed using a GUS reporter system and quantitative RT-PCR analysis. Gene Ontology (GO) analysis demonstrated that 13 GO terms, including oxygen transport and cell wall generation, were highly over-represented in those genes. Although comparative analysis between rice and Arabidopsis revealed a large proportion of orthologous pairs, their spatial expression patterns were not conserved. To investigate the molecular network associated with root hair-preferential genes in rice, we analyzed the PPI network as well as coexpression data. Subsequently, we developed a refined network consisting of 24 interactions between 10 genes and 18 of their interactors.
conclusionIdentification of root hair-preferential genes and in depth analysis of those genes will be a useful reference to accelerate the understanding of root-hair development in rice.
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