Evidence map›Paper›PMID 30158531›Full record

ArticleNature communications2018

High-fidelity CRISPR/Cas9- based gene-specific hydroxymethylation rescues gene expression and attenuates renal fibrosis.

Xingbo Xu, Xiaoying Tan, Björn Tampe, Tim Wilhelmi, Melanie S Hulshoff, Shoji Saito, Tobias Moser, Raghu Kalluri, Gerd Hasenfuss, Elisabeth M Zeisberg and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 143 citations in OpenAlex.

  1. Trial
  2. A practical toolbox for modelling fibrosis in vitro.Nature biomedical engineering · 2026
    Review
  3. Review
  4. Advances and clinical potential of epigenome editing.Cellular and molecular life sciences : CMLS · 2026
    Review
  5. Review
  6. Epigenetic editing: from concept to clinic.Nature reviews. Drug discovery · 2026
    Review
  7. Epigenetic editing of marine medaka (Zoological research · 2026
    Article
  8. Epigenome editing based treatment: Progresses and challenges.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Review
  9. Article
  10. Article
  11. CRISPR Technology and Its Emerging Applications.Genomics, proteomics & bioinformatics · 2025
    Review
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Gene Therapy Techniques and Delivery Methods (Review).Sovremennye tekhnologii v meditsine · 2025
    Review
  20. New approaches to acute kidney injury.Clinical kidney journal · 2024
    Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Xingbo XuDepartment of Cardiology and Pneumology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
Xiaoying TanGerman Center for Cardiovascular Research (DZHK) Partner Site, Göttingen, Germany.
Björn TampeDepartment of Nephrology and Rheumatology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.ORCID http://orcid.org/0000-0002-4357-9863
Tim WilhelmiDepartment of Cardiology and Pneumology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
Melanie S HulshoffDepartment of Cardiology and Pneumology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
Shoji SaitoDepartment of Nephrology and Rheumatology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
Tobias MoserInstitute for Auditory Neuroscience & Inner Ear Lab, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.ORCID http://orcid.org/0000-0001-7145-0533
Raghu KalluriDepartment of Cancer Biology, Metastasis Research Center, University of Texas, MD Anderson Cancer Center, 1881 East Road, Houston, TX, 77054-1901, USA.
Gerd HasenfussDepartment of Cardiology and Pneumology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany.
Elisabeth M ZeisbergDepartment of Cardiology and Pneumology, University Medical Center Göttingen, Robert-Koch-Str. 40, 37075, Göttingen, Germany. elisabeth.zeisberg@med.uni-goettingen.de.
Michael ZeisbergGerman Center for Cardiovascular Research (DZHK) Partner Site, Göttingen, Germany.
Universitätsmedizin Göttingen · DEGerman Centre for Cardiovascular Research · DEThe University of Texas MD Anderson Cancer Center · USUniversity Medical Center Groningen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While suppression of specific genes through aberrant promoter methylation contributes to different diseases including organ fibrosis, gene-specific reactivation technology is not yet available for therapy. TET enzymes catalyze hydroxymethylation of methylated DNA, reactivating gene expression. We here report generation of a high-fidelity CRISPR/Cas9-based gene-specific dioxygenase by fusing an endonuclease deactivated high-fidelity Cas9 (dHFCas9) to TET3 catalytic domain (TET3CD), targeted to specific genes by guiding RNAs (sgRNA). We demonstrate use of this technology in four different anti-fibrotic genes in different cell types in vitro, among them RASAL1 and Klotho, both hypermethylated in kidney fibrosis. Furthermore, in vivo lentiviral delivery of the Rasal1-targeted fusion protein to interstitial cells and of the Klotho-targeted fusion protein to tubular epithelial cells each results in specific gene reactivation and attenuation of fibrosis, providing gene-specific demethylating technology in a disease model.

Indexed as

AnimalsCell LineChromatin ImmunoprecipitationCRISPR-Cas SystemsDNA MethylationFibrosisGlucuronidaseGTPase-Activating ProteinsHigh-Throughput Nucleotide SequencingHumansKidney DiseasesKlotho ProteinsLentivirusMicePromoter Regions, GeneticGlucuronidaseGTPase-Activating ProteinsKlotho ProteinsRASAL1 protein, human

Identifiers

PMID30158531
PMCPMC6115451
OpenAlexW2888607195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.