Evidence map›Paper›PMID 30158294›Full record

ArticleJournal of virology2018

An N-Glycosylated Form of SERINC5 Is Specifically Incorporated into HIV-1 Virions.

Shilpi Sharma, Mary K Lewinski, John Guatelli

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. SERINC5 counters retroviruses and non-retroviruses.Frontiers in cellular and infection microbiology · 2024
    Review
  3. Article
  4. HIV-1 restriction by SERINC5.Medical microbiology and immunology · 2023
    Review
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Shilpi SharmaDepartment of Medicine, University of California-San Diego, La Jolla, California, USA ssharma@vapop.ucsd.edu jguatelli@ucsd.edu.
Mary K LewinskiDepartment of Medicine, University of California-San Diego, La Jolla, California, USA.
John GuatelliDepartment of Medicine, University of California-San Diego, La Jolla, California, USA ssharma@vapop.ucsd.edu jguatelli@ucsd.edu.
VA San Diego Healthcare System · USUniversity of California, San Diego · US

Funding

Enhancement of Infectivity by HIV-1 Nef via Antagonism of SERINC ProteinsR01AI129706 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2017 to 2021
$2.8M
HIV-1 Modulation of the Ubiquitinome and Its Effects on Cell-to-Cell TransmissionK08AI112394 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LEWINSKI, MARY KATHLEEN · 2015 to 2019
$971k
NIAID NIH HHS K08 AI112394NIAID NIH HHS R01 AI129706
6 · The paper itself

Abstract

SERINC5 is an inhibitor of retroviral infectivity that is counteracted by viral proteins, including HIV-1 Nef. Inhibition of infectivity by SERINC5 is associated with its incorporation into virions. Nef counteracts this inhibition, presumably by removing SERINC5 from sites of virion assembly at the plasma membrane. While evaluating the virion incorporation of SERINC5, we observed that a relatively high molecular weight form was preferentially present in virions. We used various glycosidases to establish that virion-associated SERINC5 is modified by N-linked, complex glycans, whereas the majority of SERINC5 in cells is of relatively low molecular weight and is modified by high-mannose glycans. Sequence alignment of SERINC family proteins led us to identify a conserved N-glycosylation site, N294, in SERINC5. We mutated this site to evaluate its effect on glycosylation, the restrictive activity of SERINC5, and the sensitivity of SERINC5 to antagonism by Nef. Our results demonstrate that N294 is the major site of N-glycosylation in SERINC5. Although N-glycosylation was required neither for restrictive activity nor for sensitivity to Nef

Indexed as

Cell LineCell MembraneGlycosylationHEK293 CellsHIV-1Host-Pathogen InteractionsHumansLeupeptinsLysosomesMacrolidesMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusPolysaccharidesProteasome Inhibitorsbafilomycin A1benzyloxycarbonylleucyl-leucyl-leucine aldehydeLeupeptinsMacrolidesMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusPolysaccharidesProteasome InhibitorsSERINC5 protein, humanglycosylationhuman immunodeficiency virusNefSERINC5

Identifiers

PMID30158294
PMCPMC6206478
OpenAlexW2889067871

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.