Evidence map›Paper›PMID 30158192›Full record

ArticleJournal of clinical microbiology2018

Genotyping and Quantifying Lyme Pathogen Strains by Deep Sequencing of the Outer Surface Protein C (

Lia Di, Zhenmao Wan, Saymon Akther, Chunxiao Ying, Amanda Larracuente, Li Li, Chong Di, Roy Nunez, D Moses Cucura, Noel L Goddard and 2 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Diversity and host specificity ofInfection and immunity · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Human and Veterinary Vaccines for Lyme Disease.Current issues in molecular biology · 2021
    Article
  14. Article
  15. Article
  16. Review
  17. Competition Between Strains ofFrontiers in cellular and infection microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lia DiDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA.
Zhenmao WanGraduate Center of the City University of New York, New York, New York, USA.
Saymon AktherGraduate Center of the City University of New York, New York, New York, USA.
Chunxiao YingDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA.
Amanda LarracuenteGraduate Center of the City University of New York, New York, New York, USA.
Li LiGraduate Center of the City University of New York, New York, New York, USA.
Chong DiDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA.
Roy NunezDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA.
D Moses CucuraDivision of Vector Control, Suffolk County Department of Public Works, Yaphank, New York, USA.
Noel L GoddardDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA.
Konstantino KrampisDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA.
Wei-Gang QiuDepartment of Biological Sciences, Hunter College of the City University of New York, New York, New York, USA weigang@genectr.hunter.cuny.edu.ORCID 0000-0003-4585-1872

Funding

RISE Program Hunter College Option IIIR25GM060665 · NIGMS · HUNTER COLLEGE · PI ORTIZ, BENJAMIN D.,, SERRANO, PETER A · 2000 to 2022
$22.8M
Basic and Translational Research Center for Reducing Health DisparitiesG12MD007599 · NIMHD · HUNTER COLLEGE · PI ANGULO, JESUS A · 2012 to 2017
$14.6M
Undergraduate Biomedical Research Training at HunterT34GM007823 · NIGMS · HUNTER COLLEGE · PI FORD, JENNIFER S · 1985 to 2020
$8.2M
Genome Variability and Population Processes of Lyme Disease PathogensSC1AI107955 · NIAID · HUNTER COLLEGE · PI QIU, WEIGANG · 2013 to 2016
$1.1M
Genomic & Host Drivers of Borrelia DiversificationR21AI139782 · NIAID · HUNTER COLLEGE · PI QIU, WEIGANG · 2018 to 2019
$429k
NIAID NIH HHS R21 AI139782NIAID NIH HHS SC1 AI107955NIGMS NIH HHS R25 GM060665NIGMS NIH HHS T34 GM007823NIMHD NIH HHS G12 MD007599
6 · The paper itself

Abstract

A mixed infection of a single tick or host by Lyme disease spirochetes is common and a unique challenge for the diagnosis, treatment, and surveillance of Lyme disease. Here, we describe a novel protocol for differentiating Lyme strains on the basis of deep sequencing of the hypervariable outer surface protein C locus (

Indexed as

AnimalsAntigens, BacterialBacterial LoadBacterial Outer Membrane ProteinsBorreliaBorrelia burgdorferiCoinfectionDNA, BacterialFemaleGenetic VariationGenotypeHigh-Throughput Nucleotide SequencingIxodesLyme DiseaseMaleNew YorkAntigens, BacterialBacterial Outer Membrane ProteinsDNA, BacterialOspC proteinBorrelia burgdorferiBorreliellafrequency-dependent selectionIxodes scapularisLyme diseasenext-generation sequencingouter surface protein C

Identifiers

PMID30158192
PMCPMC6204676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.