Evidence map›Paper›PMID 30158053›Full record

ArticleBiochemical and biophysical research communications2018

CELF1 contributes to aberrant alternative splicing patterns in the type 1 diabetic heart.

KarryAnne Belanger, Curtis A Nutter, Jin Li, Sadia Tasnim, Peiru Liu, Peng Yu, Muge N Kuyumcu-Martinez

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

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  18. RBPTD: a database of cancer-related RNA-binding proteins in humans.Database : the journal of biological databases and curation · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

KarryAnne BelangerDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Curtis A NutterDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Jin LiDepartment of Electrical and Computer Engineering & TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA.
Sadia TasnimDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Peiru LiuBall High School, Galveston, TX, 77555, USA.
Peng YuDepartment of Electrical and Computer Engineering & TEES-AgriLife Center for Bioinformatics and Genomic Systems Engineering, Texas A&M University, College Station, TX 77843, USA. Electronic address: pengyu.bio@gmail.com.
Muge N Kuyumcu-MartinezDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX, 77555, USA; Department of Neuroscience,Cell Biology and Anatomy, University of Texas Medical Branch, Galveston, TX, 77555, USA; Institute for Translational Sciences, University of Texas Medical Branch, Galveston, TX, 77555, USA. Electronic address: nmmartin@utmb.edu.
The University of Texas Medical Branch at Galveston · USGalveston College · USTexas A&M University · USTexas A&M University System · US

Funding

Role of Rbfox2 in hypoplastic left heart syndromeR01HL135031 · NHLBI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI KUYUMCU-MARTINEZ, MUGE NESLIHAN · 2017 to 2020
$1.5M
NHLBI NIH HHS R01 HL135031
6 · The paper itself

Abstract

Dysregulated alternative splicing (AS) that contributes to diabetes pathogenesis has been identified, but little is known about the RNA binding proteins (RBPs) involved. We have previously found that the RBP CELF1 is upregulated in the diabetic heart; however, it is unclear if CELF1 contributes to diabetes-induced AS changes. Utilizing genome wide approaches, we identified extensive changes in AS patterns in Type 1 diabetic (T1D) mouse hearts. We discovered that many aberrantly spliced genes in T1D hearts have CELF1 binding sites. CELF1-regulated AS affects key genes within signaling pathways relevant to diabetes pathogenesis. Disruption of CELF1 binding sites impairs AS regulation by CELF1. In sum, our results indicate that CELF1 target RNAs are aberrantly spliced in the T1D heart leading to abnormal gene expression. These discoveries pave the way for targeting RBPs and their RNA networks as novel therapies for cardiac complications of diabetes.

Indexed as

Alternative SplicingAnimalsCELF1 ProteinDiabetes ComplicationsDiabetes Mellitus, Type 1FemaleHeart DiseasesMaleMice, Inbred C57BLMyocardiumProtein BindingRNACELF1 ProteinCELF1 protein, mouseRNAAlternative splicingCELF1Diabetic heartRNA binding proteins

Identifiers

PMID30158053
PMCPMC6142808
OpenAlexW2888885270

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.