Evidence map›Paper›PMID 30157982›Full record

ArticleEpidemiology and infection2018

Comparison of in situ sequence type analysis of Legionella pneumophila in respiratory tract secretions and environmental samples of a hospital in East Jerusalem.

Lina Jaber, Mahmod Amro, Hadeel Abu Tair, Shereen A Bahader, Hanna Alalam, Suha Butmeh, Dalia Abu Hilal, Ingrid Brettar, Manfred G Höfle, Dina M Bitar

Open access · bronzeAbstract read
In one paragraph

Article in Epidemiology and infection, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 10 citations in OpenAlex.

  1. Tropical medicine and infectious disease · 2023
    Article
  2. Whole-genome sequencing of the clinical isolate ofEuropean clinical respiratory journal · 2023
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  3. Presence of Viable, Clinically RelevantMicrobiology spectrum · 2022
    Article
  4. Article
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  7. Biogeography and Environmental Drivers ofPathogens (Basel, Switzerland) · 2020
    Article
  8. Characterization ofPathogens (Basel, Switzerland) · 2020
    Article
  9. Rapid Detection ofBiosensors · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Lina JaberDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.ORCID 0000-0001-7171-8421
Mahmod AmroDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Hadeel Abu TairDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Shereen A BahaderDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Hanna AlalamDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Suha ButmehDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Dalia Abu HilalDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Ingrid BrettarDepartment of Vaccinology and Applied Microbiology,Helmholtz Centre for Infection Research (HZI),Braunschweig,Germany.
Manfred G HöfleDepartment of Vaccinology and Applied Microbiology,Helmholtz Centre for Infection Research (HZI),Braunschweig,Germany.
Dina M BitarDepartment of Microbiology and Immunology,Faculty of Medicine,Al-Quds University,Abu Dies, Palestine.
Al-Quds University · PSHelmholtz Centre for Infection Research · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Legionella pneumophila genotyping is important for epidemiological investigation of nosocomial and community-acquired outbreaks of legionellosis. The prevalence of legionellosis in pneumonia patients in the West Bank was monitored for the first time, and the sequence types (STs) from respiratory samples were compared with STs of environmental samples from different wards of the hospital. Sputum (n = 121) and bronchoalveolar lavage (BAL) (n = 74) specimens were cultured for L. pneumophila; genomic DNA was tested by 16S rRNA polymerase chain reaction (PCR) amplification. Nested PCR sequence-based typing (NPSBT) was implemented on DNA of the respiratory and environmental PCR-positive samples. Only one respiratory specimen was positive for L. pneumophila by culture. BAL gave a higher percentage of L. pneumophila-positive samples, 35% (26/74) than sputum, 15% (18/121) by PCR. NPSBT revealed the following STs: ST 1 (29%, 7/24), ST 461 (21%, 5/24), ST 1037 (4%, 1/24) from respiratory samples, STs from environmental samples: ST 1 (28.5%, 4/14), ST 187 (21.4%, 3/14) and ST 2070, ST 461, ST 1482 (7.1%, 1/14) each. This study emphasises the advantage of PCR over culture for the detection of L. pneumophila in countries where antibiotics are indiscriminately used prior to hospital admission. ST 1 was the predominant ST in both respiratory and environmental samples.

Indexed as

Environmental MicrobiologyAdolescentAdultAgedAged, 80 and overBodily SecretionsBronchoalveolar Lavage FluidChildChild, PreschoolDNA, BacterialDNA, RibosomalFemaleGenotypeHospitalsHumansInfantDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SEast Jerusalemlegionellosissequence-based typingWest Bank

Identifiers

PMID30157982
PMCPMC6453007
OpenAlexW2888792982

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.