Evidence map›Paper›PMID 30157471›Full record

ArticleNeoplasia (New York, N.Y.)2018

DDK Has a Primary Role in Processing Stalled Replication Forks to Initiate Downstream Checkpoint Signaling.

Nanda Kumar Sasi, Flavie Coquel, Yea-Lih Lin, Jeffrey P MacKeigan, Philippe Pasero, Michael Weinreich

Abstract read
In one paragraph

Article in Neoplasia (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  10. The yeast Dbf4 ZnCurrent genetics · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nanda Kumar SasiLaboratory of Genome Integrity and Tumorigenesis, Van Andel Research Institute (VARI), Grand Rapids, MI 49503; Laboratory of Systems Biology, VARI; Graduate Program in Genetics, Michigan State University, East Lansing, MI 48824.
Flavie CoquelIGH, Institute of Human Genetics CNRS UMR 9002 and University of Montpellier, Equipe Labellisée Ligue contre le Cancer, 141 rue de la Cardonille 34396 Cedex 5, Montpellier, France.
Yea-Lih LinIGH, Institute of Human Genetics CNRS UMR 9002 and University of Montpellier, Equipe Labellisée Ligue contre le Cancer, 141 rue de la Cardonille 34396 Cedex 5, Montpellier, France.
Jeffrey P MacKeiganLaboratory of Systems Biology, VARI.
Philippe PaseroIGH, Institute of Human Genetics CNRS UMR 9002 and University of Montpellier, Equipe Labellisée Ligue contre le Cancer, 141 rue de la Cardonille 34396 Cedex 5, Montpellier, France.
Michael WeinreichLaboratory of Genome Integrity and Tumorigenesis, Van Andel Research Institute (VARI), Grand Rapids, MI 49503. Electronic address: michael1@mit.edu.

Funding

Computational Model of Autophagy-Mediated Survival in Chemoresistant Lung CancerR01CA197398 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI HLAVACEK, WILLIAM S, MACKEIGAN, JEFFREY PAUL · 2015 to 2019
$2.5M
NCI NIH HHS R01 CA197398
6 · The paper itself

Abstract

CDC7-DBF4 kinase (DDK) initiates DNA replication in eukaryotes by activating the replicative MCM helicase. DDK has diverse and apparently conflicting roles in the replication checkpoint response in various organisms, but the underlying mechanisms are far from settled. We show that human DDK promotes limited resection of newly synthesized DNA at stalled replication forks or sites of DNA damage to initiate replication checkpoint signaling. DDK is also required for efficient fork restart and G2/M cell cycle arrest. DDK exhibits genetic interactions with the ssDNA exonuclease EXO1 and phosphorylates EXO1 in vitro. EXO1 is also required for nascent strand degradation following exposure to HU, so DDK might regulate EXO1 directly. Lastly, sublethal DDK inhibition causes various mitotic abnormalities, which is consistent with a checkpoint deficiency. In summary, DDK has a primary and previously undescribed role in the replication checkpoint to promote ssDNA accumulation at stalled forks, which is required to initiate a robust checkpoint response and cell cycle arrest to maintain genome integrity.

Indexed as

Cell Cycle ProteinsCell LineDimethyl SulfoxideDNA Repair EnzymesDNA ReplicationDNA, Single-StrandedEtoposideExodeoxyribonucleasesHumansMitosisPiperidonesProtein Serine-Threonine KinasesPyrimidinonesPyrrolesSignal TransductionCDC7 protein, humanCell Cycle ProteinsDBF4 protein, humanDimethyl SulfoxideDNA Repair EnzymesDNA, Single-StrandedEtoposideEXO1 protein, humanExodeoxyribonucleasesPHA 767491PiperidonesProtein Serine-Threonine KinasesPyrimidinonesPyrrolesXL413 compound

Identifiers

PMID30157471
PMCPMC6111017

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.