Evidence map›Paper›PMID 30157172›Full record

ArticlePLoS genetics2018

Mutation in the intracellular chloride channel CLCC1 associated with autosomal recessive retinitis pigmentosa.

Lin Li, Xiaodong Jiao, Ilaria D'Atri, Fumihito Ono, Ralph Nelson, Chi-Chao Chan, Naoki Nakaya, Zhiwei Ma, Yan Ma, Xiaoying Cai and 31 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

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  13. SARS-CoV-2PeerJ · 2023
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  16. Genetic dissection of non-syndromic retinitis pigmentosa.Indian journal of ophthalmology · 2022
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors at 13 institutions in 6 countries.

Lin LiDepartment of Ophthalmology, Shanghai Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Shanghai, P.R. China.
Xiaodong JiaoOphthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Ilaria D'AtriRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.ORCID 0000-0002-6432-4931
Fumihito OnoSection on Model Synaptic Systems, Laboratory of Molecular Physiology, National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, Maryland, United States of America.
Ralph NelsonUnit on Neural Circuits, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland, United States of America.ORCID 0000-0002-4179-7664
Chi-Chao ChanLaboratory of Immunology, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Naoki NakayaSection of Molecular Mechanisms of Glaucoma, Laboratory of Molecular and Developmental Biology, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Zhiwei MaOphthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Yan MaOphthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Xiaoying CaiSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui, P.R. China.
Longhua ZhangSchool of Life Sciences, University of Science and Technology of China, Hefei, Anhui, P.R. China.
Siying LinRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.ORCID 0000-0003-1122-8396
Abdul HameedRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.
Barry A ChiozaRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.ORCID 0000-0002-3546-1726
Holly HardyRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.ORCID 0000-0003-4603-7784
Gavin ArnoInstitute of Ophthalmology, University College London, London, United Kingdom.
Sarah HullInstitute of Ophthalmology, University College London, London, United Kingdom.
Muhammad Imran KhanFaculty of Science, COMSATS Institute of Information Technology, Islamabad, Pakistan.
James FashamRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.ORCID 0000-0002-7614-9202
Gaurav V HarlalkaRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.
Michel MichaelidesInstitute of Ophthalmology, University College London, London, United Kingdom.
Anthony T MooreInstitute of Ophthalmology, University College London, London, United Kingdom.ORCID 0000-0001-7087-1205
Zeynep Hande Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Shalini JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, United States of America.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, United States of America.
Frans P M CremersDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behaviour, Radboud University Medical Center, Nijmegen, The Netherlands.
Raheel QamarFaculty of Science, COMSATS Institute of Information Technology, Islamabad, Pakistan.
Ahmed SalmanFaculty of Medicine, University of Southampton, Southampton, United Kingdom.
John ChiltonRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.
Jay SelfFaculty of Medicine, University of Southampton, Southampton, United Kingdom.ORCID 0000-0002-1030-9963
Radha AyyagariShiley Eye Institute, University of California San Diego, La Jolla, California, United States of America.
Firoz KabirNational Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Muhammad Asif NaeemNational Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Muhammad AliNational Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Javed AkramAllama Iqbal Medical College, University of Health Sciences, Lahore, Pakistan.
Paul A SievingNational Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Sheikh RiazuddinNational Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Emma L BapleRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.
S Amer RiazuddinNational Centre of Excellence in Molecular Biology, University of the Punjab, Lahore, Pakistan.
Andrew H CrosbyRILD Wellcome Wolfson Centre, Royal Devon & Exeter NHS Foundation Trust, Exeter, United Kingdom.
J Fielding HejtmancikOphthalmic Genetics and Visual Function Branch, National Eye Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
National Institutes of Health · USRoyal Devon & Exeter NHS Foundation Trust · GBBaylor College of Medicine · USJohns Hopkins University · USMoorfields Eye Hospital · GBCOMSATS University Islamabad · PKUniversity of Science and Technology of China · CNUniversity of Southampton · GBUniversity of the Punjab · PKAllama Iqbal Medical College · PKRadboud University Nijmegen · NLUniversity of California San Diego · USUniversity of California, San Francisco · US

Funding

Inherited Ocular DiseasesZIAEY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 2009 to 2025
$27.0M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Structure And Function In Retinal NeuronsZIANS002631 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI NELSON, RALPH F · 2009 to 2023
$6.6M
Molecular Basis of Hereditary Retinal DegenerationsR01EY021237 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AYYAGARI, RADHA · 2011 to 2020
$5.6M
INHERITED OCULAR DISEASESZ01EY000272 · NEI · NATIONAL EYE INSTITUTE · PI HEJTMANCIK, JAMES F. · 1991 to 2008
$4.8M
Intramural NIH HHS Z01 EY000272Medical Research Council G1002279NEI NIH HHS R01 EY021237NHGRI NIH HHS UM1 HG006542Wellcome TrustWellcome Trust 209083/Z/17/Z
6 · The paper itself

Abstract

We identified a homozygous missense alteration (c.75C>A, p.D25E) in CLCC1, encoding a presumptive intracellular chloride channel highly expressed in the retina, associated with autosomal recessive retinitis pigmentosa (arRP) in eight consanguineous families of Pakistani descent. The p.D25E alteration decreased CLCC1 channel function accompanied by accumulation of mutant protein in granules within the ER lumen, while siRNA knockdown of CLCC1 mRNA induced apoptosis in cultured ARPE-19 cells. TALEN KO in zebrafish was lethal 11 days post fertilization. The depressed electroretinogram (ERG) cone response and cone spectral sensitivity of 5 dpf KO zebrafish and reduced eye size, retinal thickness, and expression of rod and cone opsins could be rescued by injection of wild type CLCC1 mRNA. Clcc1+/- KO mice showed decreased ERGs and photoreceptor number. Together these results strongly suggest that intracellular chloride transport by CLCC1 is a critical process in maintaining retinal integrity, and CLCC1 is crucial for survival and function of retinal cells.

Indexed as

Mutation, MissenseAnimalsAsian PeopleCell LineChloride ChannelsCytoplasmEye ProteinsHEK293 CellsHomozygoteHumansMiceMice, KnockoutPakistanRetinaRetinal Cone Photoreceptor CellsRetinal Rod Photoreceptor CellsChloride ChannelsCLCC1 protein, humanClcc1 protein, mouseEye Proteins

Identifiers

PMID30157172
PMCPMC6133373
OpenAlexW2888792732

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.