Evidence map›Paper›PMID 30154523›Full record

ArticleScientific reports2018

Disruption of mesoderm formation during cardiac differentiation due to developmental exposure to 13-cis-retinoic acid.

Qing Liu, Kevin Van Bortle, Yue Zhang, Ming-Tao Zhao, Joe Z Zhang, Benjamin S Geller, Joshua J Gruber, Chao Jiang, Joseph C Wu, Michael P Snyder

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  8. Article
  9. Cardiac Development in the Presence of Cadmium: AnEnvironmental health perspectives · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Qing LiuDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA.
Kevin Van BortleDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA.
Yue ZhangDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA.
Ming-Tao ZhaoStanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, California, 94305, USA.
Joe Z ZhangStanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, California, 94305, USA.
Benjamin S GellerDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA.
Joshua J GruberDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA.
Chao JiangDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA.
Joseph C WuStanford Cardiovascular Institute, Stanford University School of Medicine, Stanford, California, 94305, USA.
Michael P SnyderDepartment of Genetics, Stanford University School of Medicine, Stanford, California, 94305, USA. mpsnyder@stanford.edu.
Stanford University · USCardiovascular Institute of the South · US

Funding

Spectrum Stanford Center for clinical and Translational Research and EducationUL1TR001085 · NCATS · STANFORD UNIVERSITY · PI CULLEN, MARK RICHARD, GREENBERG, HARRY BERNARD · 2013 to 2017
$37.1M
Biorepository of Human iPSCs for Studying Dilated and Hypertrophic CardiomyopathyR24HL117756 · NHLBI · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL, SNYDER, MICHAEL P. · 2014 to 2018
$8.8M
Human Induced Pluripotent Stem Cells for Cardiovascular Disease ModelingR01HL113006 · NHLBI · STANFORD UNIVERSITY · PI WU, JOSEPH C. · 2012 to 2025
$6.8M
VECTOR COREP30NS069375 · NINDS · STANFORD UNIVERSITY · PI SHAMLOO, MEHRDAD · 2011 to 2019
$6.3M
A Systems Biology Approach to Study Cardiac Arrhythmias: iPS Cells and In Silico ModelingR01HL128170 · NHLBI · STANFORD UNIVERSITY · PI ALTMAN, RUSS BIAGIO, CLANCY, COLLEEN E · 2015 to 2018
$3.0M
High-throughput sequencer for multi-scale genomic studiesS10OD020141 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2015 to 2015
$600k
Computational appliance: a supercomputer for modern biomedical researchS10OD023452 · OD · STANFORD UNIVERSITY · PI DATTA, SOMALEE · 2017 to 2017
$600k
Integrated Personalized Epigenome Profiling and the Effect of Dietary Exposure on Individuals at Risk for Type-2-DiabetesF32DK107112 · NIDDK · STANFORD UNIVERSITY · PI VAN BORTLE, KEVIN · 2015 to 2017
$162k
California Institute for Regenerative Medicine (CIRM) GC1R-06673-ANCATS NIH HHS UL1 TR001085NHLBI NIH HHS R01 HL113006NHLBI NIH HHS R01 HL128170NHLBI NIH HHS R24 HL117756NIDDK NIH HHS F32 DK107112NIH HHS S10 OD020141NINDS NIH HHS P30 NS069375U.S. Department of Health & Human Services | NIH | National Center for Advancing Translational Sciences (NCATS) NIH-NCATS-CTSA, UL1 TR001085
6 · The paper itself

Abstract

13-cis-retinoic acid (isotretinoin, INN) is an oral pharmaceutical drug used for the treatment of skin acne, and is also a known teratogen. In this study, the molecular mechanisms underlying INN-induced developmental toxicity during early cardiac differentiation were investigated using both human induced pluripotent stem cells (hiPSCs) and human embryonic stem cells (hESCs). Pre-exposure of hiPSCs and hESCs to a sublethal concentration of INN did not influence cell proliferation and pluripotency. However, mesodermal differentiation was disrupted when INN was included in the medium during differentiation. Transcriptomic profiling by RNA-seq revealed that INN exposure leads to aberrant expression of genes involved in several signaling pathways that control early mesoderm differentiation, such as TGF-beta signaling. In addition, genome-wide chromatin accessibility profiling by ATAC-seq suggested that INN-exposure leads to enhanced DNA-binding of specific transcription factors (TFs), including HNF1B, SOX10 and NFIC, often in close spatial proximity to genes that are dysregulated in response to INN treatment. Altogether, these results identify potential molecular mechanisms underlying INN-induced perturbation during mesodermal differentiation in the context of cardiac development. This study further highlights the utility of human stem cells as an alternative system for investigating congenital diseases of newborns that arise as a result of maternal drug exposure during pregnancy.

Indexed as

Cell DifferentiationCell LineGene Expression Regulation, DevelopmentalHeartHuman Embryonic Stem CellsHumansInduced Pluripotent Stem CellsIsotretinoinMesodermSignal TransductionIsotretinoin

Identifiers

PMID30154523
PMCPMC6113333
OpenAlexW2888495415

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.