Evidence map›Paper›PMID 30154373›Full record

ArticleMolecules (Basel, Switzerland)2018

Adaptive QM/MM for Molecular Dynamics Simulations: 5. On the Energy-Conserved Permuted Adaptive-Partitioning Schemes.

Adam W Duster, Chun-Hung Wang, Hai Lin

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Computer physics communications · 2024
    Article
  3. Article
  4. Article
  5. A Many-Body, Fully Polarizable Approach to QM/MM Simulations.Journal of chemical theory and computation · 2020
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Adam W DusterDepartment of Chemistry, University of Colorado Denver, Denver, CO 80217, USA. ADAM.DUSTER@ucdenver.edu.ORCID 0000-0002-3503-1558
Chun-Hung WangDepartment of Chemistry, University of Colorado Denver, Denver, CO 80217, USA. nakada0155@gmail.com.ORCID 0000-0002-0223-2695
Hai LinDepartment of Chemistry, University of Colorado Denver, Denver, CO 80217, USA. hai.lin@ucdenver.edu.ORCID 0000-0002-3525-9122

Funding

Camille and Henry Dreyfus Foundation TH-14-028National Science Foundation CHE-1564349Nvidia n/a
6 · The paper itself

Abstract

In combined quantum-mechanical/molecular-mechanical (QM/MM) dynamics simulations, the adaptive-partitioning (AP) schemes reclassify atoms on-the-fly as QM or MM in a smooth manner. This yields a mobile QM subsystem with contents that are continuously updated as needed. Here, we tailor the Hamiltonian adaptive many-body correction (HAMBC) proposed by Boreboom et al. [

Indexed as

Molecular Dynamics SimulationQuantum TheoryAlgorithmsMolecular ConformationMolecular StructureWaterWateradaptive partitioningcombined QM/MMenergy conservationmolecular dynamics simulationsradial distribution function

Identifiers

PMID30154373
PMCPMC6225285

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.