Evidence map›Paper›PMID 30153798›Full record

ArticleBMC genomics2018

New insights into phylogeography of worldwide Brucella canis isolates by comparative genomics-based approaches: focus on Brazil.

Acácia Ferreira Vicente, Guillaume Girault, Yannick Corde, Mateus Souza Ribeiro Mioni, Lara Borges Keid, Maryne Jay, Jane Megid, Virginie Mick

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. The emergence ofEmerging microbes & infections · 2023
    Review
  3. Article
  4. Prevalence and Genomic Characterization ofAnimals : an open access journal from MDPI · 2020
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Acácia Ferreira VicenteEU/OIE/FAO & National Reference Laboratory for animal Brucellosis, Animal Health Laboratory, Paris-Est University/Anses, Maisons-Alfort, France.
Guillaume GiraultEU/OIE/FAO & National Reference Laboratory for animal Brucellosis, Animal Health Laboratory, Paris-Est University/Anses, Maisons-Alfort, France. guillaume.girault@anses.fr.
Yannick CordeEU/OIE/FAO & National Reference Laboratory for animal Brucellosis, Animal Health Laboratory, Paris-Est University/Anses, Maisons-Alfort, France.
Mateus Souza Ribeiro MioniMolecular Biology Laboratory, Dept. Veterinary Hygiene and Public Health, FMVZ, UNESP, Botucatu, Brazil.
Lara Borges KeidDept. Veterinary Medicine, University of Animal Science and Food Engineering, USP, Pirassununga, Brazil.
Maryne JayEU/OIE/FAO & National Reference Laboratory for animal Brucellosis, Animal Health Laboratory, Paris-Est University/Anses, Maisons-Alfort, France.
Jane MegidMolecular Biology Laboratory, Dept. Veterinary Hygiene and Public Health, FMVZ, UNESP, Botucatu, Brazil.
Virginie MickEU/OIE/FAO & National Reference Laboratory for animal Brucellosis, Animal Health Laboratory, Paris-Est University/Anses, Maisons-Alfort, France. virginie.mick@anses.fr.
Paris-Est Sup · FRUniversidade Estadual Paulista (Unesp) · BRAgence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FRDépartement Santé Animale · FR

Funding

Bru-EPIDIA 291815-FP7/ERANET/ ANIHWACAPES 88887.117958/2016-00FAPESP 2014/00889-0
6 · The paper itself

Abstract

backgroundCanine brucellosis, due to Brucella canis, is a worldwide zoonosis that remains endemic in South America, including Brazil. Implementation of powerful whole-genome sequencing approaches allowed exploring the Brucella genus considered as monomorphic, with, to date, more than 500 genomes available in public databases. Nevertheless, with under-representation of B. canis genomes -only twenty complete or draft genomes-, lack of knowledge about this species is still considerable. This report describes a comparative genomics-based phylogeographic investigation of 53 B. canis strains, including 28 isolates paired-end sequenced in this work.

resultsObtained results allow identifying a SNP panel species-specific to B. canis of 1086 nucleotides. In addition, high-resolution analyses assess the epidemiological relationship between worldwide isolates. Our findings show worldwide strains are distributed among 2 distinct lineages. One of them seems to be specific to South American strains, including Brazil. B. canis South American strains may be identified by a SNP panel of 15 nucleotides, whereas a 22 SNP panel is sufficient to define contamination origin from Brazil. These results lead to the proposal of a possible spread route for dog brucellosis through South America. Additionally, whole-genome analyses highlight the remarkable genomic stability of B. canis strains over time and the sustainability of the infection in São Paulo over 12 year-period.

conclusionsSignificant increase of B. canis genomes available in public databases provides new insights into B. canis infection in South America, including Brazil, as well as in the world, and also offers new perspectives for the Brucella genus largo sensu.

Indexed as

GenomicsPhylogeographyBrazilBrucella canisBrazilBrucella canisDog brucellosisEuropePhylogeographySão PauloSNPWhole genome sequencing

Identifiers

PMID30153798
PMCPMC6114238
OpenAlexW2888805020

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.