Evidence map›Paper›PMID 30152900›Full record

ArticleMolecular microbiology2018

Supercoiling of an excised genomic island represses effector gene expression to prevent activation of host resistance.

Helen C Neale, Robert W Jackson, Gail M Preston, Dawn L Arnold

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Genome Evolution in Plant Pathogenic Bacteria.Genome biology and evolution · 2026
    Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Rapid dissemination of host metabolism-manipulating genes via integrative and conjugative elements.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. What makes a megaplasmid?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  9. Article
  10. Article
  11. DNA Supercoiling: an Ancestral Regulator of Gene Expression in Pathogenic Bacteria?Computational and structural biotechnology journal · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Helen C NealeCentre for Research in Bioscience, Faculty of Health and Applied Sciences, The University of the West of England, Frenchay Campus, Bristol, BS16 1QY, UK.
Robert W JacksonSchool of Biological Sciences, University of Reading, Reading, RG6 6UR, UK.
Gail M PrestonDepartment of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK.
Dawn L ArnoldCentre for Research in Bioscience, Faculty of Health and Applied Sciences, The University of the West of England, Frenchay Campus, Bristol, BS16 1QY, UK.ORCID 0000-0002-2767-086X
University of the West of England · GBUniversity of Oxford · GBUniversity of Reading · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J014796/1Biotechnology and Biological Sciences Research Council BB/J015350/1Biotechnology and Biological Sciences Research Council BB/J016012/1Biotechnology and Biological Sciences Research Council BB/R009236/1
6 · The paper itself

Abstract

The plant pathogen Pseudomonas syringae pv. phaseolicola, which causes halo blight disease of beans, contains a 106 kb genomic island PPHGI-1. PPHGI-1 carries a gene, avrPphB, which encodes an effector protein that triggers a resistance response in certain bean cultivars. Previous studies have shown that when PPHGI-1 is excised from the bacterial chromosome, avrPphB is downregulated and therefore the pathogen avoids triggering the host's defence mechanism. Here, we investigate whether the downregulation of avrPphB is caused by the supercoiling of PPHGI-1. We also investigate the effect of a PPHGI-1-encoded type 1A topoisomerase, TopB3, on island stability and bacterial pathogenicity in the plant. Supercoiling inhibitors significantly increased the expression of avrPphB but did not affect the excision of PPHGI-1. An insertional mutant of topB3 displayed an increase in avrPphB expression and an increase in PPHGI-1 excision as well as reduced population growth in resistant and susceptible cultivars of bean. These results suggest an important role for topoisomerases in the maintenance and stability of a bacterial-encoded genomic island and demonstrate that supercoiling is involved in the downregulation of an effector gene once the island has been excised, allowing the pathogen to prevent further activation of the host defence response.

Indexed as

Gene Expression Regulation, BacterialGenomic IslandsBacterial ProteinsDNA, BacterialDNA, SuperhelicalDNA TopoisomerasesGenomic InstabilityMutagenesis, InsertionalPhaseolusPlant DiseasesPseudomonas syringaeVirulence FactorsavrPphB protein, Pseudomonas syringaeBacterial ProteinsDNA, BacterialDNA, SuperhelicalDNA TopoisomerasesVirulence Factors

Identifiers

PMID30152900
PMCPMC6220960
OpenAlexW2888983163

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.