Evidence map›Paper›PMID 30151981›Full record

ArticleElectrophoresis2019

Mechanical characterization of HIV-1 with a solid-state nanopore sensor.

Armin Darvish, Jung Soo Lee, Bin Peng, Jugal Saharia, Ramalingam VenkatKalyana Sundaram, Gaurav Goyal, Nuwan Bandara, Chi Won Ahn, Jungsuk Kim, Prashanta Dutta and 2 more

Open access · greenAbstract read
In one paragraph

Article in Electrophoresis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Two-dimensional material-based virus detection.Science China. Chemistry · 2022
    Review
  7. Review
  8. Nanopore Technology for the Application of Protein Detection.Nanomaterials (Basel, Switzerland) · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Application of Solid-State Nanopore in Protein Detection.International journal of molecular sciences · 2020
    Review
  15. Review
  16. Analysis Method of the Ion Current-Time Waveform Obtained from Low Aspect Ratio Solid-state Nanopores.Analytical sciences : the international journal of the Japan Society for Analytical Chemistry · 2020
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Armin DarvishSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA, USA.
Jung Soo LeeDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.
Bin PengDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.
Jugal SahariaDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.
Ramalingam VenkatKalyana SundaramSchool of Biomedical Engineering, Science and Health Systems, Drexel University, Philadelphia, PA, USA.
Gaurav GoyalQuantum Biosystems Inc, Menlo Park, CA, USA.
Nuwan BandaraDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.
Chi Won AhnNano-Materials Laboratory, National NanoFab Center, Daejeon, Republic of Korea.
Jungsuk KimDepartment of Biomedical Engineering, Gachon University, Incheon, Republic of Korea.
Prashanta DuttaSchool of Mechanical and Materials Engineering, Washington State University, Pullman, WA, USA.ORCID 0000-0001-5082-3994
Irwin ChaikenDepartment of Biochemistry and Molecular Biology, Drexel University College of Medicine, Philadelphia, PA, USA.
Min Jun KimDepartment of Mechanical Engineering, Southern Methodist University, Dallas, TX, USA.ORCID 0000-0002-0819-1644
Southern Methodist University · USDrexel University · USGachon University · KRNational NanoFab Center · KRWashington State University · US

Funding

Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01AI150471 · NIAID · DREXEL UNIVERSITY · PI HENDRICKSON, WAYNE A. · 2019 to 2022
$7.8M
Multivalent Env gp120 Targeting Gold Nanoparticle Virucides of HIV-1R01GM111029 · NIGMS · DREXEL UNIVERSITY · PI CHAIKEN, IRWIN M · 2013 to 2016
$1.2M
Nanopore Force Spectroscopy and Sorting of Vesicles at NanoscaleR03EB022759 · NIBIB · SOUTHERN METHODIST UNIVERSITY · PI KIM, MINJUN · 2016 to 2017
$141k
National Research Foundation of Korea NRF-2015K1A4A3047100National Research Foundation of Korea NRF-2015M3A6B3068660National Research Foundation of Korea NRF-2015M3A7B6027973National Science Foundation #1712069National Science Foundation CMMI #1707818NIAID NIH HHS P01 AI150471NIBIB NIH HHS R03 EB022759NIGMS NIH HHS P01 GM056550NIGMS NIH HHS R01 GM111029NIH HHS P01GM56550NIH HHS R01GM111029NIH HHS R03EB022759
6 · The paper itself

Abstract

Enveloped viruses fuse with cells to transfer their genetic materials and infect the host cell. Fusion requires deformation of both viral and cellular membranes. Since the rigidity of viral membrane is a key factor in their infectivity, studying the rigidity of viral particles is of great significance in understating viral infection. In this paper, a nanopore is used as a single molecule sensor to characterize the deformation of pseudo-type human immunodeficiency virus type 1 at sub-micron scale. Non-infective immature viruses were found to be more rigid than infective mature viruses. In addition, the effects of cholesterol and membrane proteins on the mechanical properties of mature viruses were investigated by chemically modifying the membranes. Furthermore, the deformability of single virus particles was analyzed through a recapturing technique, where the same virus was analyzed twice. The findings demonstrate the ability of nanopore resistive pulse sensing to characterize the deformation of a single virus as opposed to average ensemble measurements.

Indexed as

NanoporesBiomechanical PhenomenaCholesterolElectrochemical TechniquesHIV-1Membrane LipidsVirionCholesterolMembrane Lipidsviral envelope lipidsHuman immunodeficiency virusMechanical characterizationResistive pulseSolid-state nanoporeViral maturity

Identifiers

PMID30151981
PMCPMC7400684
OpenAlexW2889057865

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.