Evidence map›Paper›PMID 30151724›Full record

ArticleFunctional & integrative genomics2019

Loci and candidate genes controlling root traits in wheat seedlings-a wheat root GWAS.

Savannah Beyer, Sintayehu Daba, Priyanka Tyagi, Harold Bockelman, Gina Brown-Guedira, IWGSC, Mohsen Mohammadi

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

  1. Pooled it
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  11. Regulation of root growth and elongation in wheat.Frontiers in plant science · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Savannah BeyerDepartment of Agronomy, Purdue University, 915 West State Street, West Lafayette, IN, 47907, USA.
Sintayehu DabaDepartment of Agronomy, Purdue University, 915 West State Street, West Lafayette, IN, 47907, USA.
Priyanka TyagiDepartment of Crop and Soil Sciences, North Carolina State University, Raleigh, NC, 27695, USA.
Harold BockelmanUS Department of Agriculture, Agricultural Research Services, National Small Grains Collection, Aberdeen, ID, 83210, USA.
Gina Brown-GuediraUS Department of Agriculture, Agricultural Research Services, Small Grains Genotyping Laboratory, Raleigh, NC, 27695, USA.
IWGSC
Mohsen MohammadiDepartment of Agronomy, Purdue University, 915 West State Street, West Lafayette, IN, 47907, USA. mohamm20@purdue.edu.
Agricultural Research Service · USState Street (United States) · USNorth Carolina State University · USPurdue University West Lafayette · US

Funding

Cooperative State Research, Education, and Extension Service Hatch 1013073
6 · The paper itself

Abstract

Two hundred one hexaploid wheat accessions, representing 200 years of selection and breeding history, were sampled from the National Small Grains Collection in Aberdeen, ID, and evaluated for five root traits at the seedling stage. A paper roll-supported hydroponic system was used for seedling growth. Replicated roots samples were analyzed by WinRHIZO. We observed accessions with nearly no branching and accessions with up to 132 cm of branching. Total seminal root length ranged from 70 to 248 cm, a 3.5-fold difference. Next-generation sequencing was used to produce single-nucleotide polymorphism (SNP) markers and genomic libraries that were aligned to the wheat reference genome IWGSCv1 and were called single-nucleotide polymorphism (SNP) markers. After filtering and imputation, a total of 20,881 polymorphic sites were used to perform association mapping in TASSEL. Gene annotations were conducted for identified marker-trait associations (MTAs) with - log

Indexed as

Gene Expression Regulation, PlantGenome, PlantQuantitative Trait, HeritableGene Expression Regulation, DevelopmentalGene OntologyGenes, PlantGenome-Wide Association StudyHigh-Throughput Nucleotide SequencingHydroponicsMolecular Sequence AnnotationPlant ProteinsPlant RootsPolymorphism, Single NucleotidePolyploidyQuantitative Trait LociSeedlingsPlant ProteinsCandidate genesGWAS; QTLRoot traitsWheat

Identifiers

PMID30151724
OpenAlexW2889174703

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.