Evidence map›Paper›PMID 30151415›Full record

ArticleOpen forum infectious diseases2018

Gut Microbiota and Clinical Features Distinguish Colonization With

Anna M Seekatz, Christine M Bassis, Louis Fogg, Nicholas M Moore, Yoona Rhee, Karen Lolans, Robert A Weinstein, Michael Y Lin, Vincent B Young, Mary K Hayden and 1 more

Abstract read
In one paragraph

Article in Open forum infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. The Roles of a Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2024
    Article
  5. Article
  6. Article
  7. Prolonged Carriage of Carbapenemase-ProducingJournal of clinical medicine · 2021
    Article
  8. Epidemiological and Microbiome Associations BetweenOpen forum infectious diseases · 2020
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Anna M SeekatzDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan.ORCID 0000-0003-2586-7498
Christine M BassisDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan.
Louis FoggDepartment of Nursing, Rush College of Nursing, Chicago, Illinois.
Nicholas M MooreDepartment of Pathology.
Yoona RheeDivision of Infectious Diseases, Department of Internal Medicine, Rush Medical College, Chicago, Illinois.
Karen LolansDepartment of Pathology.
Robert A WeinsteinDivision of Infectious Diseases, Department of Internal Medicine, Rush Medical College, Chicago, Illinois.
Michael Y LinDivision of Infectious Diseases, Department of Internal Medicine, Rush Medical College, Chicago, Illinois.
Vincent B YoungDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan Medical School, Ann Arbor, Michigan.
Mary K HaydenDepartment of Pathology.
Centers for Disease Control and Prevention Epicenters Program

Funding

Michigan Institute for Clinical and Health Research (MICHR)UL1TR002240 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUMENG, JULIE C, MASHOUR, GEORGE ALEXANDER · 2017 to 2022
$54.9M
Michigan Institute for Clinical and Health Research (MCHR)UL1TR000433 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MASHOUR, GEORGE ALEXANDER · 2012 to 2016
$49.9M
NCATS NIH HHS UL1 TR000433NCATS NIH HHS UL1 TR002240NCEZID CDC HHS U54 CK000481
6 · The paper itself

Abstract

backgroundIdentification of gut microbiota features associated with antibiotic-resistant bacterial colonization may reveal new infection prevention targets.

methodsWe conducted a matched, case-control study of long-term acute care hospital (LTACH) patients to identify gut microbiota and clinical features associated with colonization by

resultsCase (n = 32) and control (n = 99) patients had distinct fecal microbiota communities, but neither microbiota diversity nor inherent clustering into community types distinguished case and control specimens. Comparison of differentially abundant operational taxonomic units (OTUs) revealed 1 OTU associated with case status in both calibration (n = 51) and validation (n = 80) subsamples that matched the canonical KPC-Kp strain ST258. Permutation analysis using the presence or absence of OTUs and hierarchical logistic regression identified 2 OTUs (belonging to genus

conclusionsWe identified microbiota and clinical features that distinguished KPC-Kp gut colonization in LTACH patients, a population particularly susceptible to KPC-Kp infection. These features may warrant further investigation as markers of risk for KPC-Kp colonization.

Indexed as

carbapenem-resistant EnterobacteriaceaeKlebsiella pneumoniaelong-term acute care hospitalsmicrobiomemicrobiota

Identifiers

PMID30151415
PMCPMC6101546

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.