Evidence map›Paper›PMID 30150596›Full record

ArticleNutrients2018

Association between Vitamin D Deficiency and Single Nucleotide Polymorphisms in the Vitamin D Receptor and GC Genes and Analysis of Their Distribution in Mexican Postmenopausal Women.

Berenice Rivera-Paredez, Nayeli Macías, Mayeli M Martínez-Aguilar, Alberto Hidalgo-Bravo, Mario Flores, Amado D Quezada-Sánchez, Edgar Denova-Gutiérrez, Miguel Cid, Angelica Martínez-Hernández, Lorena Orozco and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nutrients, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 29 citations in OpenAlex.

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  18. Association Between Single Nucleotide Polymorphisms in the Vitamin D Receptor and Incidence of Dry Eye Disease in Chinese Han Population.Medical science monitor : international medical journal of experimental and clinical research · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Berenice Rivera-ParedezAcademic Unit in Epidemiological Research, Research Center in Policies, Population and Health, School of Medicine, National Autonomous University of Mexico, Mexico City 04510, Mexico. bereriveraparedez7@gmail.com.
Nayeli MacíasNutrition and Health Research Center, National Institute of Public Health (INSP), Cuernavaca, Morelos 62100, Mexico. nmacias@insp.mx.
Mayeli M Martínez-AguilarGenomics of Bone Metabolism Laboratory, National Institute of Genomic Medicine (INMEGEN), Mexico City 14610, Mexico. mmaye.sol@gmail.com.
Alberto Hidalgo-BravoDepartment of Genetics, National Institute of Rehabilitation (INR), Mexico City 14389, Mexico. dr_genetica@yahoo.com.
Mario FloresNutrition and Health Research Center, National Institute of Public Health (INSP), Cuernavaca, Morelos 62100, Mexico. mario.flores@insp.mx.
Amado D Quezada-SánchezCenter for Evaluation and Surveys Research, National Institute of Public Health (INSP), Cuernavaca, Morelos 62100, Mexico. amado.quezada@insp.mx.
Edgar Denova-GutiérrezNutrition and Health Research Center, National Institute of Public Health (INSP), Cuernavaca, Morelos 62100, Mexico. edenovag@gmail.com.ORCID 0000-0001-9671-9682
Miguel CidInmunogenomics and Metabolic Diseases Laboratory, National Institute of Genomic Medicine (INMEGEN), Mexico City 14610, Mexico. macs090883@yahoo.com.mx.
Angelica Martínez-HernándezInmunogenomics and Metabolic Diseases Laboratory, National Institute of Genomic Medicine (INMEGEN), Mexico City 14610, Mexico. amartinez@inmegen.gob.mx.
Lorena OrozcoInmunogenomics and Metabolic Diseases Laboratory, National Institute of Genomic Medicine (INMEGEN), Mexico City 14610, Mexico. lorozco@inmegen.gob.mx.
Manuel QuiterioCenter for Population Health Research, National Institute of Public Health (INSP), Cuernavaca, Morelos 62100, Mexico. mquitero@insp.mx.
Yvonne N FloresEpidemiology and Health Services Research Unit, Mexican Institute of Social Security, Cuernavaca, Morelos 62000, Mexico. ynflores@ucla.edu.
Jorge SalmerónAcademic Unit in Epidemiological Research, Research Center in Policies, Population and Health, School of Medicine, National Autonomous University of Mexico, Mexico City 04510, Mexico. jorge.salmec@gmail.com.
Rafael Velázquez-CruzGenomics of Bone Metabolism Laboratory, National Institute of Genomic Medicine (INMEGEN), Mexico City 14610, Mexico. rvelazquez@inmegen.gob.mx.
Instituto Nacional de Salud Pública · MXNational Institute of Genomic Medicine · MXInstituto Nacional de Rehabilitación · MXKaiser Permanente · USUniversidad Nacional Autónoma de México · MX

Funding

Genetic and Environmental Risk of Liver Disease/Cancer among MexicansK07CA197179 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FLORES, YVONNE NICOLE · 2015 to 2019
$805k
NCI NIH HHS K07 CA197179
6 · The paper itself

Abstract

Genome-wide association studies in people with European ancestry suggest that polymorphisms in genes involved in vitamin D (VD) metabolism have an effect on serum concentrations of 25-hydroxyvitamin D. However, nothing is known about these polymorphisms in populations with Amerindian ancestry. Our aim was to evaluate the association between genetic variants on the vitamin D receptor (VDR) and the vitamin D binding protein (GC) genes, involved in the VD pathway, and VD deficiency in 689 unrelated Mexican postmenopausal women. We also described the frequencies of these variants in 355 postmenopausal women from different ethnic groups. Based on our preliminary results of 400 unrelated Mexican postmenopausal women, three single nucleotide polymorphisms (SNPs) were selected for genotyping. The SNPs rs4516035 in VDR and rs2282679 in GC were associated with VD deficiency. Additionally, women who carried three risk alleles had a 3.67 times higher risk of suffering VD deficiency, compared to women with no risk alleles (p = 0.002). The rs4516035-C allele frequency in the Amerindian population was enriched in the South East region of Mexico. In contrast, the highest frequency of the rs2298850-C allele, a proxy for the tag SNP rs2282679, was observed in the South region. Our results indicate that genetic variants in VDR and GC genes are associated with VD deficiency in Mexican postmenopausal women. Moreover, an association was observed for the variants rs3794060 and rs4944957 of the DHCR7/NADSYN1 gene with osteopenia/osteoporosis.

Indexed as

Polymorphism, Single NucleotideAgedAge FactorsCross-Sectional StudiesFemaleGene FrequencyGenetic Association StudiesGenetic Predisposition to DiseaseHumansMexicoMiddle AgedPhenotypePostmenopauseReceptors, CalcitriolRisk AssessmentRisk Factors25-hydroxyvitamin DGC protein, humanReceptors, CalcitriolVDR protein, humanVitamin DVitamin D-Binding Proteinbone mineral densitygenetic polymorphismMexican-Mestizototal 25(OH) vitamin Dvitamin D-binding proteinvitamin D receptor

Identifiers

PMID30150596
PMCPMC6164456
OpenAlexW2888916792

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.