Evidence map›Paper›PMID 30150410›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Circular DNA tumor viruses make circular RNAs.

Tuna Toptan, Bizunesh Abere, Michael A Nalesnik, Steven H Swerdlow, Sarangarajan Ranganathan, Nara Lee, Kathy H Shair, Patrick S Moore, Yuan Chang

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 180 citations in OpenAlex.

  1. Article
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  12. Article
  13. Viral circular RNA-encoded protein, ceVP28, divulges an antiviral response in invertebrates.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Roles of circRNAs in viral pathogenesis.Frontiers in cellular and infection microbiology · 2025
    Review
  18. Molecular Mechanisms of KSHV Latency Establishment and Maintenance.Current clinical microbiology reports · 2024
    Article
  19. Review
  20. Review

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Tuna ToptanHillman Cancer Center, Cancer Virology Program, University of Pittsburgh, Pittsburgh, PA 15213.
Bizunesh AbereHillman Cancer Center, Cancer Virology Program, University of Pittsburgh, Pittsburgh, PA 15213.ORCID 0000-0002-1857-4374
Michael A NalesnikDivision of Transplantation and Hepatic Pathology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15213.
Steven H SwerdlowDivision of Hematopathology, University of Pittsburgh Medical Center, Pittsburgh, PA 15213.
Sarangarajan RanganathanDepartment of Pathology, Children's Hospital of Pittsburgh, Pittsburgh, PA 15224.
Nara LeeDepartment of Microbiology and Molecular Genetics, University of Pittsburgh, Pittsburgh, PA 15213.
Kathy H ShairHillman Cancer Center, Cancer Virology Program, University of Pittsburgh, Pittsburgh, PA 15213.
Patrick S MooreHillman Cancer Center, Cancer Virology Program, University of Pittsburgh, Pittsburgh, PA 15213; psm9@pitt.edu yc70@pitt.edu.ORCID 0000-0002-8132-858X
Yuan ChangHillman Cancer Center, Cancer Virology Program, University of Pittsburgh, Pittsburgh, PA 15213; psm9@pitt.edu yc70@pitt.edu.ORCID 0000-0003-1125-4041
University of Pittsburgh · USChildren's Hospital of Pittsburgh · USUniversity of Pittsburgh Medical Center · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jessie Nedrow · 1988 to 2026
$158.0M
Discovery and Characterization of New Human Cancer VirusesR35CA197463 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MOORE, PATRICK S. · 2016 to 2022
$6.2M
Protein Biomarkers for a New Human Polyomavirus in AIDS-related MalignanciesR01CA136363 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MOORE, PATRICK S. · 2008 to 2015
$2.3M
Transcriptomic and Proteomic Approaches to Discovering Viral Causes for Human HemR01CA170354 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHANG, YUAN · 2012 to 2015
$1.3M
Emerging Technologies Applied to the Discovery of Human Tumor VirusesR33CA120726 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MOORE, PATRICK S. · 2007 to 2009
$757k
HSRD VA RCS 14-232NCI NIH HHS P30 CA047904NCI NIH HHS R01 CA136363NCI NIH HHS R01 CA170354NCI NIH HHS R33 CA120726NCI NIH HHS R35 CA197463
6 · The paper itself

Abstract

Epstein-Barr virus (EBV) and Kaposi's sarcoma herpesvirus (KSHV) cause ∼2% of all human cancers. RNase R-resistant RNA sequencing revealed that both gammaherpesviruses encode multiple, uniquely stable, circular RNAs (circRNA). EBV abundantly expressed both exon-only and exon-intron circRNAs from the BamHI A rightward transcript (BART) locus (circBARTs) formed from a spliced BART transcript and excluding the EBV miRNA region. The circBARTs were expressed in all verified EBV latency types, including EBV-positive posttransplant lymphoproliferative disease, Burkitt lymphoma, nasopharyngeal carcinoma, and AIDS-associated lymphoma tissues and cell lines. Only cells infected with the B95-8 EBV strain, with a 12-kb BART locus deletion, were negative for EBV circBARTs. Less abundant levels of EBV circRNAs originating from LMP2- and BHLF1-encoding genes were also identified. The circRNA sequencing of KSHV-infected primary effusion lymphoma cells revealed a KSHV-encoded circRNA from the vIRF4 locus (circvIRF4) that was constitutively expressed. In addition, KSHV polyadenylated nuclear (PAN) RNA locus generated a swarm (>100) of multiply backspliced, low-abundance RNase R-resistant circRNAs originating in both sense and antisense directions consistent with a novel hyperbacksplicing mechanism. In EBV and KSHV coinfected cells, exon-only EBV circBARTs were located more in the cytoplasm, whereas the intron-retaining circBARTs were found in the nuclear fraction. KSHV circvIRF4 and circPANs were detected in both nuclear and cytoplasmic fractions. Among viral circRNAs tested, none were found in polysome fractions from KSHV-EBV coinfected BC1 cells, although low-abundance protein translation from viral circRNAs could not be excluded. The circRNAs are a new class of viral transcripts expressed in gammaherpesvirus-related tumors that might contribute to viral oncogenesis.

Indexed as

Gene Expression Regulation, ViralCell Line, TumorDNA Tumor VirusesEpstein-Barr Virus InfectionsHerpesvirus 4, HumanHerpesvirus 8, HumanHumansLymphomaReverse Transcriptase Polymerase Chain ReactionRNARNA, CircularRNA, ViralSarcoma, KaposiRNARNA, CircularRNA, Viralcancercircular RNAEpstein−Barr virusherpesvirusKaposi sarcoma virus

Identifiers

PMID30150410
PMCPMC6140489
OpenAlexW2889349448

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.