Evidence map›Paper›PMID 30150281›Full record

ArticleMolecular systems biology2018

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases.

Daniela Michlmayr, Theodore R Pak, Adeeb H Rahman, El-Ad David Amir, Eun-Young Kim, Seunghee Kim-Schulze, Maria Suprun, Michael G Stewart, Guajira P Thomas, Angel Balmaseda and 6 more

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 1 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Daniela MichlmayrDivision of Infectious Diseases and Vaccinology, School of Public Health, University of California Berkeley, Berkeley, CA, USA.
Theodore R PakDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-1676-2523
Adeeb H RahmanDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
El-Ad David AmirDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Eun-Young KimDivision of Infectious Diseases, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID 0000-0002-7436-7396
Seunghee Kim-SchulzeDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Maria SuprunDepartment of Population Health and Science Policy, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Michael G StewartDivision of Infectious Diseases, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Guajira P ThomasDivision of Infectious Diseases, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Angel BalmasedaLaboratorio Nacional de Virología, Centro Nacional de Diagnóstico y Referencia, Ministerio de Salud, Managua, Nicaragua.
Li WangDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jun ZhuDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-0834-8178
Mayte Suaréz-FariñasDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Steven M WolinskyDivision of Infectious Diseases, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.
Andrew KasarskisDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Eva HarrisDivision of Infectious Diseases and Vaccinology, School of Public Health, University of California Berkeley, Berkeley, CA, USA eharris@berkeley.edu.ORCID 0000-0002-7238-4037
Icahn School of Medicine at Mount Sinai · USNorthwestern University · USBerkeley Public Health Division · USMinisterio de Salud · NI

Funding

Project 3 - Ex vivo immune profiling of dengue viruses and vaccinesU19AI118610 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FERNANDEZ-SESMA, ANA, HARRIS, EVA · 2015 to 2021
$46.6M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Metabolomics-based discovery of small molecule biomarkers for noninvasive dengueR33AI100186 · NIAID · COLORADO STATE UNIVERSITY · PI PERERA, RUSHIKA · 2014 to 2016
$1.3M
Multiscale analysis of immune profiling data from dengue and chikungunya virus infections in humansF30AI122673 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI PAK, THEODORE ROBERTSON · 2016 to 2018
$132k
NIAID NIH HHS F30 AI122673NIAID NIH HHS R33 AI100186NIAID NIH HHS U19 AI118610
6 · The paper itself

Abstract

Chikungunya virus (CHIKV) is a mosquito-borne alphavirus that causes global epidemics of debilitating disease worldwide. To gain functional insight into the host cellular genes required for virus infection, we performed whole-blood RNA-seq, 37-plex mass cytometry of peripheral blood mononuclear cells (PBMCs), and serum cytokine measurements of acute- and convalescent-phase samples obtained from 42 children naturally infected with CHIKV Semi-supervised classification and clustering of single-cell events into 57 sub-communities of canonical leukocyte phenotypes revealed a monocyte-driven response to acute infection, with the greatest expansions in "intermediate" CD14

Indexed as

AdolescentAnimalsCell LineageChikungunya FeverChikungunya virusChildChild, PreschoolCulicidaeCytokinesDendritic CellsGene Expression RegulationHumansImmunity, InnateInfantInfant, NewbornLeukocytes, MononuclearCytokinesLipopolysaccharide ReceptorsReceptors, IgGchikungunyaCyTOFimmune profilingpediatricRNA‐seq

Identifiers

PMID30150281
PMCPMC6110311
OpenAlexW2889037189

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.