Evidence map›Paper›PMID 30146914›Full record

ArticleRNA biology2019

Stable maintenance of the rudivirus SIRV3 in a carrier state in Sulfolobus islandicus despite activation of the CRISPR-Cas immune response by a second virus SMV1.

Pavlos Papathanasiou, Susanne Erdmann, Carlos Leon-Sobrino, Kundan Sharma, Henning Urlaub, Roger A Garrett, Xu Peng

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. A filamentous archaeal virus is enveloped inside the cell and released through pyramidal portals.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Review
  10. Diversified local CRISPR-Cas immunity to viruses of Sulfolobus islandicus.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 5 countries.

Pavlos Papathanasioua Danish Archaea Centre, Department of Biology , University of Copenhagen , Copenhagen N , Denmark.
Susanne Erdmanna Danish Archaea Centre, Department of Biology , University of Copenhagen , Copenhagen N , Denmark.
Carlos Leon-Sobrinoa Danish Archaea Centre, Department of Biology , University of Copenhagen , Copenhagen N , Denmark.
Kundan Sharmad Max Planck Institute of Biophysical Chemistry , Am Faßberg 11, D37077 Göttingen , Germany.
Henning Urlaubd Max Planck Institute of Biophysical Chemistry , Am Faßberg 11, D37077 Göttingen , Germany.
Roger A Garretta Danish Archaea Centre, Department of Biology , University of Copenhagen , Copenhagen N , Denmark.
Xu Penga Danish Archaea Centre, Department of Biology , University of Copenhagen , Copenhagen N , Denmark.ORCID 0000-0003-3926-7514
University of Copenhagen · DKUniversitätsmedizin Göttingen · DEUniversity of Oxford · GBUniversity of Technology Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carrier state viral infection constitutes an equilibrium state in which a limited fraction of a cellular population is infected while the remaining cells are transiently resistant to infection. This type of infection has been characterized for several bacteriophages but not, to date, for archaeal viruses. Here we demonstrate that the rudivirus SIRV3 can produce a host-dependent carrier state infection in the model crenarchaeon Sulfolobus. SIRV3 only infected a fraction of a Sulfolobus islandicus REY15A culture over several days during which host growth was unimpaired and no chromosomal DNA degradation was observed. CRISPR spacer acquisition from SIRV3 DNA was induced by coinfecting with the monocaudavirus SMV1 and it was coincident with increased transcript levels from subtype I-A adaptation and interference cas genes. However, this response did not significantly affect the carrier state infection of SIRV3 and both viruses were maintained in the culture over 12 days during which SIRV3 anti-CRISPR genes were shown to be expressed. Transcriptome and proteome analyses demonstrated that most SIRV3 genes were expressed at varying levels over time whereas SMV1 gene expression was generally low. The study yields insights into the basis for the stable infection of SIRV3 and the resistance to the different host CRISPR-Cas interference mechanisms. It also provides a rationale for the commonly observed coinfection of archaeal cells by different viruses in natural environments.

Indexed as

ImmunityCoinfectionCRISPR-Cas SystemsDNA, ViralGenome, ViralHeterozygoteHost-Pathogen InteractionsProteomeRNA, MessengerRudiviridaeSulfolobusViral ProteinsDNA, ViralProteomeRNA, MessengerViral ProteinsAcr proteinsarchaeal virusescarrier state infectionCRISPR-Cas adaptation and interference

Identifiers

PMID30146914
PMCPMC6546358
OpenAlexW2889369091

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.