Evidence map›Paper›PMID 30146411›Full record

ArticleCell stem cell2018

Dppa2/4 Facilitate Epigenetic Remodeling during Reprogramming to Pluripotency.

Charles Hernandez, Zheng Wang, Bulat Ramazanov, Yin Tang, Sameet Mehta, Cheryl Dambrot, Yu-Wei Lee, Kaleab Tessema, Ishan Kumar, Michael Astudillo and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 70 citations in OpenAlex.

  1. New insights into the (epi)genetics of twinning.Human reproduction (Oxford, England) · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Cell reprogramming: methods, mechanisms and applications.Cell regeneration (London, England) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Charles HernandezDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Zheng WangDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Bulat RamazanovDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Yin TangDepartment of Genetics, Yale University, New Haven, CT, USA.
Sameet MehtaDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA.
Cheryl DambrotDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Yu-Wei LeeDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Kaleab TessemaDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Ishan KumarDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Michael AstudilloDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA.
Thomas A NeubertKimmel Center for Biology and Medicine at the Skirball Institute and Department of Cell Biology, New York University School of Medicine, New York, NY, USA.
Shangqin GuoYale Stem Cell Center, Yale University, New Haven, CT, USA; Department of Cell Biology, Yale University, New Haven, CT, USA.
Natalia B IvanovaDepartment of Genetics, Yale University, New Haven, CT, USA; Yale Stem Cell Center, Yale University, New Haven, CT, USA. Electronic address: natalia.ivanova@yale.edu.
Yale Cancer Center · USYale University · USNew York University · US

Funding

Novel differentiation repressor module in human ES cellsR01GM107092 · NIGMS · YALE UNIVERSITY · PI IVANOVA, NATALIA B · 2014 to 2022
$2.6M
Molecular definition of cancer cell-of-originDP2GM123507 · NIGMS · YALE UNIVERSITY · PI GUO, SHANGQIN · 2016 to 2016
$2.5M
Epigenetic control of the pluripotent state by chromatin-associated factor Dppa2R01GM105772 · NIGMS · YALE UNIVERSITY · PI IVANOVA, NATALIA B · 2014 to 2018
$1.6M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
LTQ-Orbitrap Mass Spectrometer.S10RR027990 · NCRR · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NEUBERT, THOMAS A · 2011 to 2011
$600k
NCRR NIH HHS S10 RR027990NIGMS NIH HHS DP2 GM123507NIGMS NIH HHS R01 GM105772NIGMS NIH HHS R01 GM107092NIH HHS S10 OD018521NIH HHS S10 OD030363
6 · The paper itself

Abstract

As somatic cells are converted into induced pluripotent stem cells (iPSCs), their chromatin is remodeled to a pluripotent configuration with unique euchromatin-to-heterochromatin ratios, DNA methylation patterns, and enhancer and promoter status. The molecular machinery underlying this process is largely unknown. Here, we show that embryonic stem cell (ESC)-specific factors Dppa2 and Dppa4 play a key role in resetting the epigenome to a pluripotent state. They are induced in reprogramming intermediates, function as a heterodimer, and are required for efficient reprogramming of mouse and human cells. When co-expressed with Oct4, Klf4, Sox2, and Myc (OKSM) factors, Dppa2/4 yield reprogramming efficiencies that exceed 80% and accelerate reprogramming kinetics, generating iPSCs in 2 to 4 days. When bound to chromatin, Dppa2/4 initiate global chromatin decompaction via the DNA damage response pathway and contribute to downregulation of somatic genes and activation of ESC enhancers, all of which enables an efficient transition to pluripotency. Our work provides critical insights into how the epigenome is remodeled during acquisition of pluripotency.

Indexed as

Cellular ReprogrammingEpigenesis, GeneticAnimalsCell DifferentiationCells, CulturedGene Expression ProfilingHEK293 CellsHumansKruppel-Like Factor 4MiceMice, Inbred C57BLMice, KnockoutNuclear ProteinsPluripotent Stem CellsTranscription FactorsDppa2 protein, mouseDppa4 protein, mouseKLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4Nuclear ProteinsTranscription Factorscellular reprogrammingchromatin remodelingDNA damage responseinduced pluripotent stem cells

Identifiers

PMID30146411
PMCPMC6128737
OpenAlexW2888440394

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.