Evidence map›Paper›PMID 30146317›Full record

ArticleMolecular cell2018

The Evf2 Ultraconserved Enhancer lncRNA Functionally and Spatially Organizes Megabase Distant Genes in the Developing Forebrain.

Ivelisse Cajigas, Abhijit Chakraborty, Kelsey R Swyter, Hao Luo, Monique Bastidas, Maximilliano Nigro, Elizabeth R Morris, Sean Chen, Michael J W VanGompel, David Leib and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 86 citations in OpenAlex.

  1. Metamorphosis and lncRNAs: A Close Relationship.Genesis (New York, N.Y. : 2000) · 2026
    Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. An Update on Neuroaging on Earth and in Spaceflight.International journal of molecular sciences · 2025
    Review
  14. Hallmarks of Brain Plasticity.Biomedicines · 2025
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Ivelisse CajigasDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Abhijit ChakrabortyDivision of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, 9420 Athena Circle, La Jolla, CA 92037, USA.
Kelsey R SwyterDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Hao LuoDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Monique BastidasDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Maximilliano NigroDepartment of Physiology, Feinberg School of Medicine, Northwestern University, Chicago IL, 60611, USA.
Elizabeth R MorrisDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Sean ChenDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Michael J W VanGompelDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
David LeibDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Sara J KohtzDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA.
Marco MartinaDepartment of Physiology, Feinberg School of Medicine, Northwestern University, Chicago IL, 60611, USA.
Sooky KohDepartment of Pediatrics, Emory University, Atlanta, GA 30307, USA.
Ferhat AyDivision of Vaccine Discovery, La Jolla Institute for Allergy and Immunology, 9420 Athena Circle, La Jolla, CA 92037, USA; School of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Jhumku D KohtzDepartment of Pediatrics and Developmental Biology, Feinberg School of Medicine, Northwestern University and Stanley Manne Children's Research Institute, Box 204, 2430 N. Halsted, Chicago, IL 60614, USA. Electronic address: j-kohtz@northwestern.edu.
Northwestern University · USLa Jolla Institute for Immunology · USEmory University · US

Funding

Mechanisms regulating lncRNA short and long range signalingR01MH111267 · NIMH · NORTHWESTERN UNIVERSITY AT CHICAGO · PI KOHTZ, JHUMKU DUTT · 2017 to 2022
$3.3M
Mechanisms regulating Evf2 long non-coding RNA transcriptional controlR01MH094653 · NIMH · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI KOHTZ, JHUMKU DUTT · 2012 to 2016
$2.1M
NIMH NIH HHS R01 MH094653NIMH NIH HHS R01 MH111267
6 · The paper itself

Abstract

Gene regulation requires selective targeting of DNA regulatory enhancers over megabase distances. Here we show that Evf2, a cloud-forming Dlx5/6 ultraconserved enhancer (UCE) lncRNA, simultaneously localizes to activated (Umad1, 1.6 Mb distant) and repressed (Akr1b8, 27 Mb distant) chr6 target genes, precisely regulating UCE-gene distances and cohesin binding in mouse embryonic forebrain GABAergic interneurons (INs). Transgene expression of Evf2 activates Lsm8 (12 Mb distant) but fails to repress Akr1b8, supporting trans activation and long-range cis repression. Through both short-range (Dlx6 antisense) and long-range (Akr1b8) repression, the Evf2-5'UCE links homeodomain and mevalonate pathway-regulated enhancers to IN diversity. The Evf2-3' end is required for long-range activation but dispensable for RNA cloud localization, functionally dividing the RNA into 3'-activator and 5'UCE repressor and targeting regions. Together, these results support that Evf2 selectively regulates UCE interactions with multi-megabase distant genes through complex effects on chromosome topology, linking lncRNA-dependent topological and transcriptional control with interneuron diversity and seizure susceptibility.

Indexed as

Alcohol OxidoreductasesAnimalsCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsConserved SequenceEnhancer Elements, GeneticGene Expression Regulation, DevelopmentalHomeodomain ProteinsInterneuronsMiceNeurogenesisProsencephalonRNA, Long NoncodingTranscription FactorsAKR1B8 protein, mouseAlcohol OxidoreductasesCell Cycle ProteinsChromosomal Proteins, Non-HistoneCohesinsDlx5 protein, mouseDlx6 protein, mouseHomeodomain ProteinsRNA, Long NoncodingTranscription Factorsaldo-ketoreductase 1b8/1b10chromosome 3D structureenhancerinterneuron diversitylong non-coding RNAmevalonate pathwayseizure susceptibilityserotonin receptor Htr3atranscriptionultraconserved

Identifiers

PMID30146317
PMCPMC6428050
OpenAlexW2888282391

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.