Evidence map›Paper›PMID 30146315›Full record

ArticleMolecular cell2018

Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo.

David J Young, Desislava S Makeeva, Fan Zhang, Aleksandra S Anisimova, Elena A Stolboushkina, Fardin Ghobakhlou, Ivan N Shatsky, Sergey E Dmitriev, Alan G Hinnebusch, Nicholas R Guydosh

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. New reporters for monitoring cellular NMD.RNA (New York, N.Y.) · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

David J YoungLaboratory of Gene Regulation & Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892, USA; Laboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA.
Desislava S MakeevaBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119234, Russia; School of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow 119234, Russia.
Fan ZhangLaboratory of Gene Regulation & Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892, USA.
Aleksandra S AnisimovaSchool of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow 119234, Russia.
Elena A StolboushkinaInstitute of Protein Research, Russian Academy of Sciences, Pushchino 142290, Russia.
Fardin GhobakhlouLaboratory of Gene Regulation & Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892, USA.
Ivan N ShatskyBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119234, Russia.
Sergey E DmitrievBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119234, Russia; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia; Department of Biochemistry, Biological Faculty, Lomonosov Moscow State University, Moscow 119234, Russia. Electronic address: sergey.dmitriev@belozersky.msu.ru.
Alan G HinnebuschLaboratory of Gene Regulation & Development, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892, USA. Electronic address: ahinnebusch@nih.gov.
Nicholas R GuydoshLaboratory of Biochemistry and Genetics, National Institute of Diabetes and Digestive and Kidney Diseases, NIH, Bethesda, MD 20892, USA. Electronic address: nicholas.guydosh@nih.gov.
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USLomonosov Moscow State University · RUEngelhardt Institute of Molecular Biology · RUInstitute of Protein Research · RUNational Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Molecular mechanism of the ribosome and functions of translational regulationZIADK075132 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GUYDOSH, NICHOLAS · 2016 to 2025
$14.3M
Translational &Transcriptional Control Of GenesZ01HD001004 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI HINNEBUSCH, ALAN G · 1985 to 2008
$5.7M
Intramural NIH HHS Z01 HD001004Intramural NIH HHS ZIA DK075132
6 · The paper itself

Abstract

The recycling of ribosomal subunits after translation termination is critical for efficient gene expression. Tma64 (eIF2D), Tma20 (MCT-1), and Tma22 (DENR) function as 40S recycling factors in vitro, but it is unknown whether they perform this function in vivo. Ribosome profiling of tma deletion strains revealed 80S ribosomes queued behind the stop codon, consistent with a block in 40S recycling. We found that unrecycled ribosomes could reinitiate translation at AUG codons in the 3' UTR, as evidenced by peaks in the footprint data and 3' UTR reporter analysis. In vitro translation experiments using reporter mRNAs containing upstream open reading frames (uORFs) further established that reinitiation increased in the absence of these proteins. In some cases, 40S ribosomes appeared to rejoin with 60S subunits and undergo an 80S reinitiation process in 3' UTRs. These results support a crucial role for Tma64, Tma20, and Tma22 in recycling 40S ribosomal subunits at stop codons and translation reinitiation.

Indexed as

3' Untranslated RegionsCodon, TerminatorEscherichia coliOpen Reading FramesPeptide Chain Initiation, TranslationalProtein BiosynthesisRibosomesRibosome Subunits, Small, EukaryoticRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins3' Untranslated RegionsCodon, TerminatorRNA, MessengerSaccharomyces cerevisiae Proteins3′ UTReIF1ligatinMCTS1reinitiationribosome profilingribosome recyclingtranslationuORF

Identifiers

PMID30146315
PMCPMC6225905
OpenAlexW2888438387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.