Evidence map›Paper›PMID 30146242›Full record

ArticleCell chemical biology2018

Epidithiodiketopiperazines Inhibit Protein Degradation by Targeting Proteasome Deubiquitinase Rpn11.

Jing Li, Yaru Zhang, Bruno Da Silva Sil Dos Santos, Feng Wang, Yuyong Ma, Christian Perez, Yanling Yang, Junmin Peng, Seth M Cohen, Tsui-Fen Chou and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
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  9. Article
  10. Review
  11. High-Throughput Assay for Characterizing Rpn11 Deubiquitinase Activity.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Machine Learning-Enabled Pipeline for Large-Scale Virtual Drug Screening.Journal of chemical information and modeling · 2021
    Article
  17. Review
  18. Review
  19. Review
  20. Small-Molecule Inhibitors Targeting Proteasome-Associated Deubiquitinases.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 9 institutions in 2 countries.

Jing LiDivision of Biology and Biological Engineering, California Institute of Technology, Box 114-96, Pasadena, CA 91125, USA; Amgen Discovery Research, One Amgen Center Drive MS 29-M-B, Thousand Oaks, CA 91320, USA. Electronic address: jing.li@caltech.edu.
Yaru ZhangDivision of Biology and Biological Engineering, California Institute of Technology, Box 114-96, Pasadena, CA 91125, USA; Amgen Discovery Research, One Amgen Center Drive MS 29-M-B, Thousand Oaks, CA 91320, USA.
Bruno Da Silva Sil Dos SantosLondon Metropolitan University, 166-220 Holloway Road, London N7 8DB, UK.
Feng WangDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center and Los Angeles Biomedical Research Institute, Torrance, CA 90502, USA.
Yuyong MaDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA.
Christian PerezDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA.
Yanling YangDepartments of Structural Biology and Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Junmin PengDepartments of Structural Biology and Developmental Neurobiology, St Jude Children's Research Hospital, Memphis, TN 38105, USA.
Seth M CohenDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093, USA.
Tsui-Fen ChouDivision of Medical Genetics, Department of Pediatrics, Harbor-UCLA Medical Center and Los Angeles Biomedical Research Institute, Torrance, CA 90502, USA.
Stephen T HiltonUCL School of Pharmacy, 29-39 Brunswick Square, London WC1N 1AX, UK.
Raymond J DeshaiesDivision of Biology and Biological Engineering, California Institute of Technology, Box 114-96, Pasadena, CA 91125, USA; Howard Hughes Medical Institute, Chevy Chase, MD 26335, USA; Amgen Discovery Research, One Amgen Center Drive MS 29-M-B, Thousand Oaks, CA 91320, USA. Electronic address: deshaies@caltech.edu.
University of California, San Diego · USSt. Jude Children's Research Hospital · USAmgen (United States) · USCalifornia Institute of Technology · USHarbor–UCLA Medical Center · USHoward Hughes Medical Institute · USLondon Metropolitan University · GBUCLA Medical Center · USUniversity College London · GB

Funding

Role of CSN in the activity and dynamic cycling of cullin-RING ubiquitin ligasesR01CA164803 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI COHEN, SETH M, DESHAIES, RAYMOND J · 2013 to 2017
$1.6M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA164803
6 · The paper itself

Abstract

The 26S proteasome is the major proteolytic machine for breaking down cytosolic and nuclear proteins in eukaryotes. Due to the lack of a suitable assay, it is difficult to measure routinely and quantitatively the breakdown of proteins by the 26S proteasome in vitro. In the present study, we developed an assay to monitor proteasome-mediated protein degradation. Using this assay, we discovered that epidithiodiketopiperazine (ETPs) blocked the degradation of our model substrate in vitro. Further characterization revealed that ETPs inhibited proteasome function by targeting the essential proteasomal deubiquitinase Rpn11 (POH1/PSMD14). ETPs also inhibited other JAMM (JAB1/MPN/Mov34 metalloenzyme) proteases such as Csn5 and AMSH. An improved ETP with fewer non-specific effects, SOP11, stabilized a subset of proteasome substrates in cells, induced the unfolded protein response, and led to cell death. SOP11 represents a class of Rpn11 inhibitor and provides an alternative route to develop proteasome inhibitors.

Indexed as

Cell Line, TumorHumansPiperazinesProteasome Endopeptidase ComplexProteasome InhibitorsProteolysisTrans-ActivatorsUbiquitinUbiquitinationUnfolded Protein ResponseepidithiodiketopiperazinePiperazinesProteasome Endopeptidase ComplexProteasome InhibitorsPSMD14 protein, humanTrans-ActivatorsUbiquitinCapziminepidithiodiketopiperazinegliotoxinJAMM proteasePOH1proteasomeprotein degradationPSMD14Rpn11ubiquitin

Identifiers

PMID30146242
PMCPMC6309308
OpenAlexW2888127170

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.