Evidence map›Paper›PMID 30146168›Full record

ArticleStructure (London, England : 1993)2018

Molecular Mechanism of Resistance in a Clinically Significant Double-Mutant Variant of HCV NS3/4A Protease.

Ashley N Matthew, Florian Leidner, Alicia Newton, Christos J Petropoulos, Wei Huang, Akbar Ali, Nese KurtYilmaz, Celia A Schiffer

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Resistance outside the substrate envelope: hepatitis C NS3/4A protease inhibitors.Critical reviews in biochemistry and molecular biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Ashley N MatthewDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Florian LeidnerDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Alicia NewtonMonogram Biosciences, South San Francisco, CA 94080, USA.
Christos J PetropoulosMonogram Biosciences, South San Francisco, CA 94080, USA.
Wei HuangMonogram Biosciences, South San Francisco, CA 94080, USA.
Akbar AliDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Nese KurtYilmazDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Celia A SchifferDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: celia.schiffer@umassmed.edu.
University of Massachusetts Chan Medical School · US

Funding

Drug Resistance in HCV NS3/4A - Inhibitor binding versus substrate recognitionR01AI085051 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2010 to 2019
$4.6M
HCV protease: from atomic mechanism for drug resistance to novel drug designF31GM103259 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SOUMANA, DJADE IBRAHIM · 2013 to 2015
$86k
Structure-based design of robust cross-genotypic NS3/4A protease inhibitors that avoid resistanceF31GM119345 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MATTHEW, ASHLEY NICOLE · 2016 to 2017
$64k
NIAID NIH HHS R01 AI085051NIGMS NIH HHS F31 GM103259NIGMS NIH HHS F31 GM119345
6 · The paper itself

Abstract

Despite significant progress in hepatitis C virus (HCV) protease inhibitor (PI) drug design, resistance remains a problem causing treatment failure. Double-substitution variants, notably Y56H/D168A, have emerged in patients who fail therapy with a PI-containing regimen. The resistance conferred by Asp168 substitutions has been well characterized and avoided in newer inhibitors. However, an additional mutation at Tyr56 confers resistance to even the most robust inhibitors. Here, we elucidate the molecular mechanisms of resistance for the Y56H/D168A variant against grazoprevir (and four analogs), paritaprevir, and danoprevir through inhibition assays, co-crystal structures, and molecular dynamics simulations. The PIs' susceptibility to Y56H/D168A varies, with those stacking on the catalytic His57 losing the most potency. For such inhibitors, the Y56H substitution disrupts favorable stacking interactions with the neighboring catalytic His57. This indirect mechanism of resistance threatens to cause multi-PI failure as all HCV PIs in clinical development rely on interactions with the catalytic triad.

Indexed as

Drug Resistance, Multiple, ViralMutationAmidesAmino Acid SubstitutionAntiviral AgentsCarbamatesCatalytic DomainCrystallography, X-RayCyclopropanesDEAD-box RNA HelicasesHepacivirusHumansLactams, MacrocyclicModels, MolecularMolecular Dynamics SimulationNucleoside-TriphosphataseAmidesAntiviral AgentsCarbamatesCyclopropanesDEAD-box RNA HelicasesgrazoprevirLactams, MacrocyclicNS3 protein, hepatitis C virusNucleoside-TriphosphataseProtease InhibitorsQuinoxalinesSerine EndopeptidasesSulfonamidesViral Nonstructural ProteinsViral Proteasescatalytic triadcrystal structuredouble mutantdrug resistancegrazoprevirHCVmolecular dynamicsprotease inhibitorresistance-associated substitutionresistance mechanism

Identifiers

PMID30146168
PMCPMC6260965
OpenAlexW2888428304

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.