Evidence map›Paper›PMID 30146156›Full record

ArticleCurrent biology : CB2018

The Genomic Basis of Color Pattern Polymorphism in the Harlequin Ladybird.

Mathieu Gautier, Junichi Yamaguchi, Julien Foucaud, Anne Loiseau, Aurélien Ausset, Benoit Facon, Bernhard Gschloessl, Jacques Lagnel, Etienne Loire, Hugues Parrinello and 11 more

Abstract read
In one paragraph

Article in Current biology : CB, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Article
  3. Adaptation ofEvolutionary applications · 2025
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  8. Local genetic adaptation to habitat in wild chimpanzees.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Review
  11. Whole-Genome Resequencing-Based Qualitative Trait Locus Mapping CorrelatedAnimals : an open access journal from MDPI · 2024
    Article
  12. Article
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  14. Article
  15. Article
  16. Article
  17. Article
  18. A chromosome-level genome assembly of the Henosepilachna vigintioctomaculata provides insights into the evolution of ladybird beetles.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023
    Article
  19. Shell color polymorphism in marine gastropods.Evolutionary applications · 2023
    Review
  20. The genome sequence of the orange ladybird,Wellcome open research · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Mathieu GautierCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Junichi YamaguchiAix Marseille Université, CNRS, IBDM, Marseille, France.
Julien FoucaudCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Anne LoiseauCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Aurélien AussetCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Benoit FaconCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Bernhard GschloesslCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Jacques LagnelCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Etienne LoireCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France.
Hugues ParrinelloMGX, Biocampus Montpellier, CNRS, INSERM, Université de Montpellier, Montpellier, France.
Dany SeveracMGX, Biocampus Montpellier, CNRS, INSERM, Université de Montpellier, Montpellier, France.
Celine Lopez-RoquesINRA, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Cecile DonnadieuINRA, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Maxime MannoINRA, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Helene BergesINRA, Centre National de Ressources Génomiques Végétales, 31326 Castanet-Tolosan, France.
Karim GharbiEdinburgh Genomics, University of Edinburgh, Edinburgh, UK.
Lori Lawson-HandleyEvolutionary and Environmental Genomics Group, School of Environmental Sciences, University of Hull, Hull HU6 7RX, UK.
Lian-Sheng ZangInstitute of Biological Control, Jilin Agricultural University, Changchun, China.
Heiko VogelDepartment of Entomology, Max Planck Institute for Chemical Ecology, 07745 Jena, Germany.
Arnaud EstoupCBGP, INRA, CIRAD, IRD, Montpellier SupAgro, Université de Montpellier, Montpellier, France. Electronic address: arnaud.estoup@inra.fr.
Benjamin Prud'hommeAix Marseille Université, CNRS, IBDM, Marseille, France. Electronic address: benjamin.prudhomme@univ-amu.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many animal species comprise discrete phenotypic forms. A common example in natural populations of insects is the occurrence of different color patterns, which has motivated a rich body of ecological and genetic research [1-6]. The occurrence of dark, i.e., melanic, forms displaying discrete color patterns is found across multiple taxa, but the underlying genomic basis remains poorly characterized. In numerous ladybird species (Coccinellidae), the spatial arrangement of black and red patches on adult elytra varies wildly within species, forming strikingly different complex color patterns [7, 8]. In the harlequin ladybird, Harmonia axyridis, more than 200 distinct color forms have been described, which classic genetic studies suggest result from allelic variation at a single, unknown, locus [9, 10]. Here, we combined whole-genome sequencing, population-based genome-wide association studies, gene expression, and functional analyses to establish that the transcription factor Pannier controls melanic pattern polymorphism in H. axyridis. We show that pannier is necessary for the formation of melanic elements on the elytra. Allelic variation in pannier leads to protein expression in distinct domains on the elytra and thus determines the distinct color patterns in H. axyridis. Recombination between pannier alleles may be reduced by a highly divergent sequence of ∼170 kb in the cis-regulatory regions of pannier, with a 50 kb inversion between color forms. This most likely helps maintain the distinct alleles found in natural populations. Thus, we propose that highly variable discrete color forms can arise in natural populations through cis-regulatory allelic variation of a single gene.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideAnimalsColeopteraColorFemaleGene Expression RegulationGenome, InsectGenomicsMalePigmentationPigments, BiologicalPigments, Biologicalcis-regulationcolor formsde novo genome assembliesevolutionary geneticsgene expressiongenome-wide association studyharlequin ladybirdHarmonia axyridisinversionmelanic pattern polymorphism

Identifiers

PMID30146156
PMCPMC6203698

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.