Evidence map›Paper›PMID 30146126›Full record

ArticleAmerican journal of human genetics2018

De Novo Mutations Activating Germline TP53 in an Inherited Bone-Marrow-Failure Syndrome.

Tsutomu Toki, Kenichi Yoshida, RuNan Wang, Sou Nakamura, Takanobu Maekawa, Kumiko Goi, Megumi C Katoh, Seiya Mizuno, Fumihiro Sugiyama, Rika Kanezaki and 29 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Review
  10. p53 in the Molecular Circuitry of Bone Marrow Failure Syndromes.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Germline mutation ofScience advances · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 13 institutions in 3 countries.

Tsutomu TokiDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan.
Kenichi YoshidaCancer Genomics Project, Graduate School of Medicine, the University of Tokyo, Tokyo 113-00333, Japan; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
RuNan WangDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan; Department of Pediatrics, Shengjing Hospital of China Medical University, Shenyang 110004, Liaoning, China.
Sou NakamuraDepartment of Clinical Application, Center for iPS Cell Research and Application, Kyoto University, Kyoto 606-8507, Japan.
Takanobu MaekawaDepartment of General Pediatric and Interdisciplinary Medicine, National Center for Child Health and Development, Tokyo 157-8535, Japan.
Kumiko GoiDepartment of Pediatrics, Faculty of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Megumi C KatohDepartment of Anatomy and Embryology, Faculty of Medicine, University of Tsukuba, Tsukuba 305-8575, Japan; Laboratory Animal Resource Center, Faculty of Medicine, University of Tsukuba 305-8575, Japan.
Seiya MizunoLaboratory Animal Resource Center, Faculty of Medicine, University of Tsukuba 305-8575, Japan.
Fumihiro SugiyamaLaboratory Animal Resource Center, Faculty of Medicine, University of Tsukuba 305-8575, Japan.
Rika KanezakiDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan.
Tamayo UechiFrontier Science Research Center, University of Miyazaki, Miyazaki 889-1692, Japan.
Yukari NakajimaFrontier Science Research Center, University of Miyazaki, Miyazaki 889-1692, Japan.
Yusuke SatoCancer Genomics Project, Graduate School of Medicine, the University of Tokyo, Tokyo 113-00333, Japan; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Yusuke OkunoCancer Genomics Project, Graduate School of Medicine, the University of Tokyo, Tokyo 113-00333, Japan; Department of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan.
Aiko Sato-OtsuboCancer Genomics Project, Graduate School of Medicine, the University of Tokyo, Tokyo 113-00333, Japan; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Yusuke ShiozawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Keisuke KataokaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Yuichi ShiraishiLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, the University of Tokyo, Tokyo 108-8639, Japan.
Masashi SanadaCancer Genomics Project, Graduate School of Medicine, the University of Tokyo, Tokyo 113-00333, Japan; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan.
Kenichi ChibaLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, the University of Tokyo, Tokyo 108-8639, Japan.
Hiroko TanakaLaboratory of Sequence Analysis, Human Genome Center, Institute of Medical Science, the University of Tokyo, Tokyo 108-8639, Japan.
Kiminori TeruiDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan.
Tomohiko SatoDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan.
Takuya KamioDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan.
Hirotoshi SakaguchiDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan.
Shouichi OhgaDepartment of Pediatrics, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Madoka KuramitsuDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.
Isao HamaguchiDepartment of Safety Research on Blood and Biological Products, National Institute of Infectious Diseases, Tokyo 208-0011, Japan.
Akira OharaDepartment of Pediatrics, Omori Medical Center, Toho University, Tokyo 143-8540, Japan.
Hitoshi KannoDepartment of Transfusion Medicine and Cell Processing, Tokyo Women's Medical University, Tokyo 162-8666, Japan.
Satoru MiyanoLaboratory of DNA Information Analysis, Human Genome Center, Institute of Medical Science, the University of Tokyo, Tokyo 108-8639, Japan; Laboratory of Sequence Analysis, Human Genome Center, Institute of Medical Science, the University of Tokyo, Tokyo 108-8639, Japan.
Seiji KojimaDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya 466-8550, Japan.
Akira IshiguroDivision of Hematology, National Center for Child Health and Development, Tokyo 157-8535, Japan.
Kanji SugitaDepartment of Pediatrics, Faculty of Medicine, University of Yamanashi, Yamanashi 409-3898, Japan.
Naoya KenmochiFrontier Science Research Center, University of Miyazaki, Miyazaki 889-1692, Japan.
Satoru TakahashiDepartment of Anatomy and Embryology, Faculty of Medicine, University of Tsukuba, Tsukuba 305-8575, Japan; Laboratory Animal Resource Center, Faculty of Medicine, University of Tsukuba 305-8575, Japan.
Koji EtoDepartment of Clinical Application, Center for iPS Cell Research and Application, Kyoto University, Kyoto 606-8507, Japan.
Seishi OgawaCancer Genomics Project, Graduate School of Medicine, the University of Tokyo, Tokyo 113-00333, Japan; Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto 606-8501, Japan; Department of Medicine, Karolinska Institute, Center for Hematology and Regenerative Medicine, SE-171 76 Stockholm, Sweden. Electronic address: sogawa-tky@umin.ac.jp.
Etsuro ItoDepartment of Pediatrics, Hirosaki University Graduate School of Medicine, Hirosaki 036-8562, Japan. Electronic address: eturou@hirosaki-u.ac.jp.
Kyoto University · JPHirosaki University · JPUniversity of Tsukuba · JPNagoya University · JPThe University of Tokyo · JPUniversity of Miyazaki · JPNational Center For Child Health and Development · JPNational Institute of Infectious Diseases · JPUniversity of Yamanashi · JPKyushu University · JPToho University · JPTokyo Medical University · JPTokyo Women's Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inherited bone-marrow-failure syndromes (IBMFSs) include heterogeneous genetic disorders characterized by bone-marrow failure, congenital anomalies, and an increased risk of malignancy. Many lines of evidence have suggested that p53 activation might be central to the pathogenesis of IBMFSs, including Diamond-Blackfan anemia (DBA) and dyskeratosis congenita (DC). However, the exact role of p53 activation in each clinical feature remains unknown. Here, we report unique de novo TP53 germline variants found in two individuals with an IBMFS accompanied by hypogammaglobulinemia, growth retardation, and microcephaly mimicking DBA and DC. TP53 is a tumor-suppressor gene most frequently mutated in human cancers, and occasional germline variants occur in Li-Fraumeni cancer-predisposition syndrome. Most of these mutations affect the core DNA-binding domain, leading to compromised transcriptional activities. In contrast, the variants found in the two individuals studied here caused the same truncation of the protein, resulting in the loss of 32 residues from the C-terminal domain (CTD). Unexpectedly, the p53 mutant had augmented transcriptional activities, an observation not previously described in humans. When we expressed this mutant in zebrafish and human-induced pluripotent stem cells, we observed impaired erythrocyte production. These findings together with close similarities to published knock-in mouse models of TP53 lacking the CTD demonstrate that the CTD-truncation mutations of TP53 cause IBMFS, providing important insights into the previously postulated connection between p53 and IBMFSs.

Indexed as

AdolescentAdultAgammaglobulinemiaAnemia, Diamond-BlackfanAnimalsBone MarrowBone Marrow DiseasesChild, PreschoolErythrocytesFemaleGerm CellsGrowth DisordersHumansInduced Pluripotent Stem CellsInfantInfant, NewbornTP53 protein, humanTumor Suppressor Protein p53Diamond-Blackfan anemiadyskeratosis congenitagene editinghuman-induced pluripotent stem cellinherited bone marrow failure syndromeiPSCp53the C-terminal domainTP53zebrafish

Identifiers

PMID30146126
PMCPMC6128301
OpenAlexW2888044471

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.