ArticleAsian-Australasian journal of animal sciences2019
Genetic diversity of Indonesian cattle breeds based on microsatellite markers.
Article in Asian-Australasian journal of animal sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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13 citing papers in PubMed.
- Microsatellite-based genetic diversity assessment of Donggala cattleVeterinary world · 2025Article
- Analysis of genetic diversity and phylogenetic relationships among Indonesian native cattle breeds using microsatellite markers: A review.Veterinary world · 2025Review
- Comparison of ruminal ecology and blood profiles in Bali, Madura, and Ongole crossbred cattle of Indonesia.Veterinary world · 2025Article
- Deciphering genetic diversity in conserved cattle bulls to achieve sustainable development goals.Scientific reports · 2024Article
- Genetic differentiation and structuration of the Gobra zebu cattle breeds reared in Senegal.Tropical animal health and production · 2023Article
- The Role of Reproduction and Genetic Variation in Polish White-Backed Cows in the Breed Restoration Process.Animals : an open access journal from MDPI · 2023Article
- Morphometric and physical characteristics of Indonesian beef cattle.Archives animal breeding · 2023Article
- Genetic Diversity and Population Structure of Selected Ethiopian Indigenous Cattle Breeds Using Microsatellite Markers.Genetics research · 2023Article
- Revealing Genetic Diversity and Population Structure of Endangered Altay White-Headed Cattle Population Using 100 k SNP Markers.Animals : an open access journal from MDPI · 2022Article
- Genetic diversity in reproductive traits of Braunvieh cattle determined with SNP markers.Veterinary medicine and science · 2022Article
- Genetic diversity and population structure of four Nigerian indigenous cattle breeds.Tropical animal health and production · 2022Article
- Genetic Diversity and Population Structure for Resistance and Susceptibility to Mastitis in Braunvieh Cattle.Veterinary sciences · 2021Article
- Genetic characterization and population structure of different coat colour variants of Badri cattle.Molecular biology reports · 2020Article
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7 authors.
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Abstract
objectiveThis research was conducted to study the genetic diversity in several Indonesian cattle breeds using microsatellite markers to classify the Indonesian cattle breeds.
methodsA total of 229 DNA samples from of 10 cattle breeds were used in this study. The polymerase chain reaction process was conducted using 12 labeled primers. The size of allele was generated using the multiplex DNA fragment analysis. The POPGEN and CERVUS programs were used to obtain the observed number of alleles, effective number of alleles, observed heterozygosity value, expected heterozygosity value, allele frequency, genetic differentiation, the global heterozygote deficit among breeds, and the heterozygote deficit within the breed, gene flow, Hardy-Weinberg equilibrium, and polymorphism information content values. The MEGA program was used to generate a dendrogram that illustrates the relationship among cattle population. Bayesian clustering assignments were analyzed using STRUCTURE program. The GENETIX program was used to perform the correspondence factorial analysis (CFA). The GENALEX program was used to perform the principal coordinates analysis (PCoA) and analysis of molecular variance. The principal component analysis (PCA) was performed using adegenet package of R program.
resultsA total of 862 alleles were detected in this study. The INRA23 allele 205 is a specific allele candidate for the Sumba Ongole cattle, while the allele 219 is a specific allele candidate for Ongole Grade. This study revealed a very close genetic relationship between the Ongole Grade and Sumba Ongole cattle and between the Madura and Pasundan cattle. The results from the CFA, PCoA, and PCA analysis in this study provide scientific evidence regarding the genetic relationship between Banteng and Bali cattle. According to the genetic relationship, the Pesisir cattle were classified as Bos indicus cattle.
conclusionAll identified alleles in this study were able to classify the cattle population into three clusters i.e. Bos taurus cluster (Simmental Purebred, Simmental Crossbred, and Holstein Friesian cattle); Bos indicus cluster (Sumba Ongole, Ongole Grade, Madura, Pasundan, and Pesisir cattle); and Bos javanicus cluster (Banteng and Bali cattle).
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