Evidence map›Paper›PMID 30143708›Full record

ArticleScientific reports2018

Selection scan reveals three new loci related to high altitude adaptation in Native Andeans.

Vanessa C Jacovas, Cainã M Couto-Silva, Kelly Nunes, Renan B Lemes, Marcelo Z de Oliveira, Francisco M Salzano, Maria Cátira Bortolini, Tábita Hünemeier

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Vanessa C JacovasGenetics Departament, Biosciences Institute, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil.
Cainã M Couto-SilvaDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP, Brazil.ORCID 0000-0001-8847-1381
Kelly NunesDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP, Brazil.
Renan B LemesDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP, Brazil.
Marcelo Z de OliveiraVale do Rio dos Sinos University, São Leopoldo, RS, Brazil.
Francisco M SalzanoGenetics Departament, Biosciences Institute, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil.
Maria Cátira BortoliniGenetics Departament, Biosciences Institute, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil. maria.bortolini@ufrgs.br.
Tábita HünemeierDepartment of Genetics and Evolutionary Biology, Biosciences Institute, University of São Paulo, São Paulo, SP, Brazil. hunemeier@usp.br.
Universidade de São Paulo · BRUniversidade Federal do Rio Grande do Sul · BRUniversidade do Vale do Rio dos Sinos · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Andean Altiplano has been occupied continuously since the late Pleistocene, ~12,000 years ago, which places the Andean natives as one of the most ancient populations living at high altitudes. In the present study, we analyzed genomic data from Native Americans living a long-time at Andean high altitude and at Amazonia and Mesoamerica lowland areas. We have identified three new candidate genes - SP100, DUOX2 and CLC - with evidence of positive selection for altitude adaptation in Andeans. These genes are involved in the TP53 pathway and are related to physiological routes important for high-altitude hypoxia response, such as those linked to increased angiogenesis, skeletal muscle adaptations, and immune functions at the fetus-maternal interface. Our results, combined with other studies, showed that Andeans have adapted to the Altiplano in different ways and using distinct molecular strategies as compared to those of other natives living at high altitudes.

Indexed as

AltitudeGenetic LociSelection, GeneticAdaptation, PhysiologicalAllelesAmerican Indian or Alaska NativeGenetics, PopulationGeographyHaplotypesHomozygoteHumansPolymorphism, Single NucleotideSouth America

Identifiers

PMID30143708
PMCPMC6109162
OpenAlexW2888095253

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.