Evidence map›Paper›PMID 30143664›Full record

ArticleScientific reports2018

Mutant KLF1 in Adult Anemic Nan Mice Leads to Profound Transcriptome Changes and Disordered Erythropoiesis.

Danitza Nébor, Joel H Graber, Steven L Ciciotte, Raymond F Robledo, Julien Papoin, Emily Hartman, Kevin R Gillinder, Andrew C Perkins, James J Bieker, Lionel Blanc and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Danitza NéborThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Joel H GraberThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Steven L CiciotteThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Raymond F RobledoThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Julien PapoinFeinstein Institute for Medical Research, Manhasset, NY, 11030, USA.
Emily HartmanFeinstein Institute for Medical Research, Manhasset, NY, 11030, USA.
Kevin R GillinderAustralian Centre for Blood Diseases, Monash University, Melbourne, VIC, 3004, Australia.
Andrew C PerkinsAustralian Centre for Blood Diseases, Monash University, Melbourne, VIC, 3004, Australia.
James J BiekerDepartment of Cell, Developmental and Regenerative Biology, Mount Sinai School of Medicine, New York, NY, 10029, USA.
Lionel BlancFeinstein Institute for Medical Research, Manhasset, NY, 11030, USA.ORCID 0000-0002-0185-6260
Luanne L PetersThe Jackson Laboratory, Bar Harbor, ME, 04609, USA. luanne.peters@jax.org.
Jackson Laboratory · USFeinstein Institute for Medical Research · USThe Alfred Hospital · AUIcahn School of Medicine at Mount Sinai · USMount Desert Island Biological Laboratory · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
The Maine Biomedical Research Network (INBRE)P20GM103423 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI Dustin Lynn Updike · 2012 to 2026
$60.0M
Understanding the role of thyroid hormone signaling during axolotl limb regenerationP20GM104318 · NIGMS · MOUNT DESERT ISLAND BIOLOGICAL LAB · PI DRUMMOND, IAIN A. · 2013 to 2023
$23.0M
Function of Putative Determinant in HematopoiesisR01DK046865 · NIDDK · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI JAMES J BIEKER · 1993 to 2026
$11.2M
Genetic Modifiers of Beta-like Globin Gene SwitchingR01DK100692 · NIDDK · JACKSON LABORATORY · PI PETERS, LUANNE L · 2013 to 2018
$1.8M
NCI NIH HHS P30 CA034196NIDDK NIH HHS R01 DK046865NIDDK NIH HHS R01 DK100692NIGMS NIH HHS P20 GM103423NIGMS NIH HHS P20 GM104318
6 · The paper itself

Abstract

Anemic Nan mice carry a mutation (E339D) in the second zinc finger of erythroid transcription factor KLF1. Nan-KLF1 fails to bind a subset of normal KLF1 targets and ectopically binds a large set of genes not normally engaged by KLF1, resulting in a corrupted fetal liver transcriptome. Here, we performed RNAseq using flow cytometric-sorted spleen erythroid precursors from adult Nan and WT littermates rendered anemic by phlebotomy to identify global transcriptome changes specific to the Nan Klf1 mutation as opposed to anemia generally. Mutant Nan-KLF1 leads to extensive and progressive transcriptome corruption in adult spleen erythroid precursors such that stress erythropoiesis is severely compromised. Terminal erythroid differentiation is defective in the bone marrow as well. Principle component analysis reveals two major patterns of differential gene expression predicting that defects in basic cellular processes including translation, cell cycle, and DNA repair could contribute to disordered erythropoiesis and anemia in Nan. Significant erythroid precursor stage specific changes were identified in some of these processes in Nan. Remarkably, however, despite expression changes in large numbers of associated genes, most basic cellular processes were intact in Nan indicating that developing red cells display significant physiological resiliency and establish new homeostatic set points in vivo.

Indexed as

AgingAnemiaAnimalsBase SequenceCell CycleCell DifferentiationDNA DamageErythroid CellsErythropoiesisFemaleGene Expression Regulation, DevelopmentalGene OntologyKruppel-Like Transcription FactorsLiverMiceMice, Mutant Strainserythroid Kruppel-like factorKruppel-Like Transcription FactorsReactive Oxygen Species

Identifiers

PMID30143664
PMCPMC6109071
OpenAlexW2888586780

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.