Evidence map›Paper›PMID 30143514›Full record

ArticleThe EMBO journal2018

TRIM16 controls assembly and degradation of protein aggregates by modulating the p62-NRF2 axis and autophagy.

Kautilya Kumar Jena, Srinivasa Prasad Kolapalli, Subhash Mehto, Parej Nath, Biswajit Das, Pradyumna Kumar Sahoo, Abdul Ahad, Gulam Hussain Syed, Sunil K Raghav, Shantibhusan Senapati and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it, 141 citations in OpenAlex.

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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Kautilya Kumar JenaCell Biology and Infectious Diseases Unit, Institute of Life Sciences, Bhubaneswar, India.
Srinivasa Prasad KolapalliCell Biology and Infectious Diseases Unit, Institute of Life Sciences, Bhubaneswar, India.
Subhash MehtoCell Biology and Infectious Diseases Unit, Institute of Life Sciences, Bhubaneswar, India.ORCID 0000-0002-5351-7850
Parej NathCell Biology and Infectious Diseases Unit, Institute of Life Sciences, Bhubaneswar, India.
Biswajit DasTumor Microenvironment and Animal Models, Institute of Life Sciences, Bhubaneswar, India.
Pradyumna Kumar SahooCell Biology and Infectious Diseases Unit, Institute of Life Sciences, Bhubaneswar, India.
Abdul AhadImmuno-Genomics and Systems Biology, Institute of Life Sciences, Bhubaneswar, India.
Gulam Hussain SyedMolecular Virology and Infectious Diseases, Institute of Life Sciences, Bhubaneswar, India.
Sunil K RaghavImmuno-Genomics and Systems Biology, Institute of Life Sciences, Bhubaneswar, India.
Shantibhusan SenapatiTumor Microenvironment and Animal Models, Institute of Life Sciences, Bhubaneswar, India.
Swati ChauhanTranslational Research, Institute of Life Sciences, Bhubaneswar, India.
Santosh ChauhanCell Biology and Infectious Diseases Unit, Institute of Life Sciences, Bhubaneswar, India schauhan@ils.res.in.ORCID 0000-0001-9167-5107
Institute of Life Sciences · INManipal Academy of Higher Education · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/15/2/502071Wellcome Trust
6 · The paper itself

Abstract

Sequestration of protein aggregates in inclusion bodies and their subsequent degradation prevents proteostasis imbalance, cytotoxicity, and proteinopathies. The underlying molecular mechanisms controlling the turnover of protein aggregates are mostly uncharacterized. Herein, we show that a TRIM family protein, TRIM16, governs the process of stress-induced biogenesis and degradation of protein aggregates. TRIM16 facilitates protein aggregate formation by positively regulating the p62-NRF2 axis. We show that TRIM16 is an integral part of the p62-KEAP1-NRF2 complex and utilizes multiple mechanisms for stabilizing NRF2. Under oxidative and proteotoxic stress conditions, TRIM16 activates ubiquitin pathway genes and p62 via NRF2, leading to ubiquitination of misfolded proteins and formation of protein aggregates. We further show that TRIM16 acts as a scaffold protein and, by interacting with p62, ULK1, ATG16L1, and LC3B, facilitates autophagic degradation of protein aggregates. Thus, TRIM16 streamlines the process of stress-induced aggregate clearance and protects cells against oxidative/proteotoxic stress-induced toxicity

Indexed as

Protein AggregatesProteolysisAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsDNA-Binding ProteinsHEK293 CellsHeLa CellsHumansIntracellular Signaling Peptides and ProteinsKelch-Like ECH-Associated Protein 1Microtubule-Associated ProteinsMultiprotein ComplexesNF-E2-Related Factor 2Oxidative StressRNA-Binding ProteinsTranscription FactorsATG16L1 protein, humanAutophagy-Related Protein-1 HomologAutophagy-Related ProteinsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsKEAP1 protein, humanKelch-Like ECH-Associated Protein 1MAP1LC3B protein, humanMicrotubule-Associated ProteinsMultiprotein ComplexesNFE2L2 protein, humanNF-E2-Related Factor 2P62 protein, humanProtein AggregatesRNA-Binding ProteinsTranscription FactorsTRIM16 protein, humanTripartite Motif ProteinsUbiquitin-Protein LigasesULK1 protein, humanautophagyNRF2p62protein aggregatesTRIM16

Identifiers

PMID30143514
PMCPMC6138442
OpenAlexW2888498094

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.