Evidence map›Paper›PMID 30142192›Full record

ArticlePloS one2018

Deacetylase activity-independent transcriptional activation by HDAC2 during TPA-induced HL-60 cell differentiation.

Hyeonsoo Jung, Ji-Young Kim, Kee-Beom Kim, Yun-Cheol Chae, Yoonsoo Hahn, Jung-Woong Kim, Sang-Beom Seo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Hyeonsoo JungDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Ji-Young KimDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Kee-Beom KimDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Yun-Cheol ChaeDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Yoonsoo HahnDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Jung-Woong KimDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.
Sang-Beom SeoDepartment of Life Science, College of Natural Sciences, Chung-Ang University, Seoul, Korea.ORCID 0000-0003-4709-6022
Chung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human myeloid leukemia cell line HL-60 differentiate into monocytes following treatment with 12-O-tetradecanoylphorbol-13-acetate (TPA). However, the mechanism underlying the differentiation of these cells in response to TPA has not been fully elucidated. In this study, we performed ChIP-seq profiling of RNA Pol II, HDAC2, Acetyl H3 (AcH3), and H3K27me3 and analyzed differential chromatin state changes during TPA-induced differentiation of HL-60 cells. We focused on atypically active genes, which showed enhanced H3 acetylation despite increased HDAC2 recruitment. We found that HDAC2 positively regulates the expression of these genes in a histone deacetylase activity-independent manner. HDAC2 interacted with and recruited paired box 5 (PAX5) to the promoters of the target genes and regulated HL-60 cell differentiation by PAX5-mediated gene activation. Taken together, these data elucidated the specific-chromatin status during HL-60 cell differentiation following TPA exposure and suggested that HDAC2 can activate transcription of certain genes through interactions with PAX5 in a deacetylase activity-independent pathway.

Indexed as

Cell DifferentiationChromatinHistone Deacetylase 2HL-60 CellsHumansPAX5 Transcription FactorTetradecanoylphorbol AcetateTranscriptional ActivationChromatinHistone Deacetylase 2PAX5 protein, humanPAX5 Transcription FactorTetradecanoylphorbol Acetate

Identifiers

PMID30142192
PMCPMC6108480
OpenAlexW2888442227

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.