Evidence map›Paper›PMID 30142157›Full record

ArticlePLoS genetics2018

cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg.

Susan Newcomb, Roumen Voutev, Aurelie Jory, Rebecca K Delker, Matthew Slattery, Richard S Mann

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

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  7. Hedgehog produced by theDevelopment (Cambridge, England) · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Susan NewcombDepartment of Biological Sciences, Columbia University, New York, NY, United States of America.ORCID 0000-0002-8563-9422
Roumen VoutevDepartment of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY, United States of America.ORCID 0000-0003-0066-4731
Aurelie JoryDepartment of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY, United States of America.
Rebecca K DelkerDepartment of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY, United States of America.
Matthew SlatteryDepartment of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY, United States of America.
Richard S MannDepartment of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY, United States of America.
Columbia University · US

Funding

Hormones: Molecular Mechanism of Action and FunctionsT32DK007328 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KOUSTENI, STAVROULA · 1986 to 2025
$7.8M
Interpreting and Deploying Genomic Information During Animal DevelopmentR35GM118336 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI RICHARD S MANN · 2016 to 2026
$6.9M
Proximo-distal Patterning inthe Drosophila appendegesR01GM058575 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 1999 to 2016
$5.7M
NIDDK NIH HHS T32 DK007328NIGMS NIH HHS R01 GM058575NIGMS NIH HHS R35 GM118336
6 · The paper itself

Abstract

We characterized the establishment of an Epidermal Growth Factor Receptor (EGFR) organizing center (EOC) during leg development in Drosophila melanogaster. Initial EGFR activation occurs in the center of leg discs by expression of the EGFR ligand Vn and the EGFR ligand-processing protease Rho, each through single enhancers, vnE and rhoE, that integrate inputs from Wg, Dpp, Dll and Sp1. Deletion of vnE and rhoE eliminates vn and rho expression in the center of the leg imaginal discs, respectively. Animals with deletions of both vnE and rhoE (but not individually) show distal but not medial leg truncations, suggesting that the distal source of EGFR ligands acts at short-range to only specify distal-most fates, and that multiple additional 'ring' enhancers are responsible for medial fates. Further, based on the cis-regulatory logic of vnE and rhoE we identified many additional leg enhancers, suggesting that this logic is broadly used by many genes during Drosophila limb development.

Indexed as

Enhancer Elements, GeneticGene Expression Regulation, DevelopmentalAllelesAnimalsDrosophila melanogasterDrosophila ProteinsErbB ReceptorsExtremitiesGene DeletionHomeodomain ProteinsImaginal DiscsNeuregulinsOrganizers, EmbryonicReceptors, Invertebrate PeptideSignal TransductionSp1 Transcription Factordistal-less protein, insectdpp protein, DrosophilaDrosophila ProteinsEgfr protein, DrosophilaErbB ReceptorsHomeodomain ProteinsNeuregulinsReceptors, Invertebrate PeptideSp1 protein, DrosophilaSp1 Transcription FactorTranscription FactorsTransforming Growth Factor betavn protein, Drosophilawg protein, DrosophilaWnt1 Protein

Identifiers

PMID30142157
PMCPMC6147608
OpenAlexW2951811705

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.