Evidence map›Paper›PMID 30141354›Full record

ArticleJournal of enzyme inhibition and medicinal chemistry2018

Discovery of (phenylureido)piperidinyl benzamides as prospective inhibitors of bacterial autolysin E from Staphylococcus aureus.

Jure Borišek, Sara Pintar, Mitja Ogrizek, Simona Golič Grdadolnik, Vesna Hodnik, Dušan Turk, Andrej Perdih, Marjana Novič

Open access · goldAbstract read
In one paragraph

Article in Journal of enzyme inhibition and medicinal chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. TargetingAntibiotics (Basel, Switzerland) · 2024
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Jure Borišeka National Institute of Chemistry , Ljubljana , Slovenia.
Sara Pintarb Department of Biochemistry, Molecular and Structural Biology , Jozef Stefan Institute , Ljubljana , Slovenia.
Mitja Ogrizeka National Institute of Chemistry , Ljubljana , Slovenia.
Simona Golič Grdadolnika National Institute of Chemistry , Ljubljana , Slovenia.
Vesna Hodnikd Biotechnical Faculty , Infrastructural Center for Surface Plasmon Resonance , Ljubljana , Slovenia.
Dušan Turkb Department of Biochemistry, Molecular and Structural Biology , Jozef Stefan Institute , Ljubljana , Slovenia.
Andrej Perdiha National Institute of Chemistry , Ljubljana , Slovenia.
Marjana Noviča National Institute of Chemistry , Ljubljana , Slovenia.
National Institute of Chemistry · SICentre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins · SIJožef Stefan International Postgraduate School · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autolysin E (AtlE) is a cell wall degrading enzyme that catalyzes the hydrolysis of the β-1,4-glycosidic bond between the N-acetylglucosamine and N-acetylmuramic acid units of the bacterial peptidoglycan. Using our recently determined crystal structure of AtlE from Staphylococcus aureus and a combination of pharmacophore modeling, similarity search, and molecular docking, a series of (Phenylureido)piperidinyl benzamides were identified as potential binders and surface plasmon resonance (SPR) and saturation-transfer difference (STD) NMR experiments revealed that discovered compounds bind to AtlE in a lower micromolar range. (phenylureido)piperidinyl benzamides are the first reported non-substrate-like compounds that interact with this enzyme and enable further study of the interaction of small molecules with bacterial AtlE as potential inhibitors of this target.

Indexed as

Drug DiscoveryAnti-Bacterial AgentsDose-Response Relationship, DrugEnzyme InhibitorsMicrobial Sensitivity TestsModels, MolecularMolecular StructureN-Acetylmuramoyl-L-alanine AmidasePiperidinesStaphylococcus aureusStructure-Activity RelationshipAnti-Bacterial AgentsEnzyme InhibitorsN-Acetylmuramoyl-L-alanine AmidasePiperidinesAutolysin Eglycoside hydrolaseSPRSTD NMRvirtual screening

Identifiers

PMID30141354
PMCPMC6116672
OpenAlexW2888108893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.