Evidence map›Paper›PMID 30141273›Full record

ArticleMolecular genetics & genomic medicine2018

Identification of paternal uniparental disomy on chromosome 22 and a de novo deletion on chromosome 18 in individuals with orofacial clefts.

Ganiyu O Oseni, Deepti Jain, Peter A Mossey, Tamara D Busch, Lord J J Gowans, Mekonen A Eshete, Wasiu L Adeyemo, Cecelia A Laurie, Cathy C Laurie, Arwa Owais and 19 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Genome-Wide Scan for Parent-of-Origin Effects in a sub-Saharan African Cohort With Nonsyndromic Cleft Lip and/or Cleft Palate (CL/P).The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 14 institutions in 5 countries.

Ganiyu O OseniDepartment of Plastic Surgery, Ladoke Akintola University of Science and Technology, Osogbo, Nigeria.
Deepti JainDepartment of Biostatistics, Genetic Coordinating Center, University of Washington, Seattle, Washington.
Peter A MosseyDepartment of Orthodontics, University of Dundee, Dundee, UK.
Tamara D BuschDepartment of Pediatrics, University of Iowa, Iowa City, Iowa.
Lord J J GowansKwame Nkrumah University of Science and Technology, Kumasi, Ghana.ORCID 0000-0003-0080-9101
Mekonen A EsheteSchool of Public Health, Addis Ababa University, Addis Ababa, Ethiopia.
Wasiu L AdeyemoDepartment of Oral and Maxillofacial Surgery, University of Lagos, Lagos, Nigeria.ORCID 0000-0002-0257-7853
Cecelia A LaurieDepartment of Biostatistics, Genetic Coordinating Center, University of Washington, Seattle, Washington.
Cathy C LaurieDepartment of Biostatistics, Genetic Coordinating Center, University of Washington, Seattle, Washington.
Arwa OwaisDepartment of Pediatric Dentistry, University of Iowa, Iowa City, Iowa.
Peter B OlaitanDepartment of Plastic Surgery, Ladoke Akintola University of Science and Technology, Osogbo, Nigeria.
Babatunde S AregbesolaDepartment of Oral and Maxillofacial Surgery, Obafemi Awolowo University, Ile Ife, Nigeria.
Fadekemi O OginniDepartment of Oral and Maxillofacial Surgery, Obafemi Awolowo University, Ile Ife, Nigeria.
Saidu A BelloState House Clinic, Abuja, Nigeria.
Peter DonkorKwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Rosemary AuduDepartment of Virology, Nigerian Institute of Medical Research, Lagos, Nigeria.
Chika OnwuamahDepartment of Virology, Nigerian Institute of Medical Research, Lagos, Nigeria.
Solomon Obiri-YeboahKwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Gyikua Plange-RhuleKwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Olugbenga M OgunleweDepartment of Oral and Maxillofacial Surgery, University of Lagos, Lagos, Nigeria.
Olutayo JamesDepartment of Oral and Maxillofacial Surgery, University of Lagos, Lagos, Nigeria.
Taiye HaliluSchool of Public Health, Addis Ababa University, Addis Ababa, Ethiopia.
Firke AbateSchool of Public Health, Addis Ababa University, Addis Ababa, Ethiopia.
Lukman O Abdur-RahmanDivision of Pediatric Surgery, Department of Surgery, University of Ilorin, Ilorin, Nigeria.
Abimbola V OladugbaDepartment of Biostatistics, University of Nigeria, Nsukka, Nigeria.
Mary L MarazitaDepartment of Oral Biology, Center for Craniofacial and Dental Genetics, University of Pittsburgh, Pittsburgh, Pennsylvania.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, Iowa.
Adebowale A AdeyemoNational Human Genomic Research Institute, Bethesda, Maryland.ORCID 0000-0002-3105-3231
Azeez ButaliDepartment of Oral Pathology, Radiology and Medicine, University of Iowa, Iowa City, Iowa.ORCID 0000-0002-1229-5964
Kwame Nkrumah University of Science and Technology · GHUniversity of Iowa · USAddis Ababa University · ETUniversity of Lagos · NGUniversity of Washington · USLadoke Akintola University of Technology · NGNigerian Institute of Medical Research · NGObafemi Awolowo University · NGAfrihealth Optonet Association · NGNational Human Genome Research Institute · USUniversity of Dundee · GBUniversity of Ilorin · NGUniversity of Nigeria · NGUniversity of Pittsburgh · US

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
Genetic studies of nonsyndromic clefts in populations of African Descent.R00DE022378 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2014 to 2016
$747k
Genetic studies of nonsyndromic clefts in populations of African Descent.K99DE022378 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2012 to 2013
$252k
NIDCR NIH HHS K99 DE022378NIDCR NIH HHS R00 DE022378NIDCR NIH HHS R01 DE016148
6 · The paper itself

Abstract

backgroundOrofacial clefts are the most common malformations of the head and neck region. Genetic and environmental factors have been implicated in the etiology of these traits.

methodsWe recently conducted genotyping of individuals from the African population using the multiethnic genotyping array (MEGA) to identify common genetic variation associated with nonsyndromic orofacial clefts. The data cleaning of this dataset allowed for screening of annotated sex versus genetic sex, confirmation of identify by descent and identification of large chromosomal anomalies.

resultsWe identified the first reported orofacial cleft case associated with paternal uniparental disomy (patUPD) on chromosome 22. We also identified a de novo deletion on chromosome 18. In addition to chromosomal anomalies, we identified cases with molecular karyotypes suggesting Klinefelter syndrome, Turner syndrome and Triple X syndrome.

conclusionObservations from our study support the need for genetic testing when clinically indicated in order to exclude chromosomal anomalies associated with clefting. The identification of these chromosomal anomalies and sex aneuploidies is important in genetic counseling for families that are at risk. Clinicians should share any identified genetic findings and place them in context for the families during routine clinical visits and evaluations.

Indexed as

AdultChildChromosome DeletionChromosome DisordersChromosomes, Human, Pair 18Chromosomes, Human, Pair 22Cleft LipCleft PalateFemaleHumansInfantInfant, NewbornMaleMiddle AgedMosaicismTrisomycleft lip and palatedeletionsGWASuniparental disomy

Identifiers

PMID30141273
PMCPMC6305633
OpenAlexW2888278333

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.