Evidence map›Paper›PMID 30140953›Full record

ArticleHistochemistry and cell biology2019

Gray-level co-occurrence matrix analysis of chromatin architecture in periportal and perivenous hepatocytes.

Jovana Paunovic, Danijela Vucevic, Tatjana Radosavljevic, Senka Pantic, Milena Veskovic, Igor Pantic

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In one paragraph

Article in Histochemistry and cell biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  6. Texture Analysis Improves the Value of PretreatmentContrast media & molecular imaging · 2020
    Article
  7. In focus in HCB.Histochemistry and cell biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Jovana PaunovicFaculty of Medicine, Institute of Pathological Physiology, University of Belgrade, Dr Subotica 9, Belgrade, 11129, Serbia.
Danijela VucevicFaculty of Medicine, Institute of Pathological Physiology, University of Belgrade, Dr Subotica 9, Belgrade, 11129, Serbia.
Tatjana RadosavljevicFaculty of Medicine, Institute of Pathological Physiology, University of Belgrade, Dr Subotica 9, Belgrade, 11129, Serbia.
Senka PanticFaculty of Medicine, Institute of Histology and Embryology, University of Belgrade Visegradska 26/II, Belgrade, 11129, Serbia.
Milena VeskovicFaculty of Medicine, Institute of Pathological Physiology, University of Belgrade, Dr Subotica 9, Belgrade, 11129, Serbia.
Igor PanticLaboratory for Cellular Physiology, Institute of Medical Physiology, Faculty of Medicine, University of Belgrade, Visegradska 26/II, Belgrade, 11129, Serbia. igorpantic@gmail.com.ORCID http://orcid.org/0000-0001-6589-8964
University of Belgrade · RS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Periportal hepatocytes (PPHs) and perivenous hepatocytes (PVHs) in standard optical microscopy appear to be morphologically identical. However, the functional properties of these two cell populations and their roles in liver lobules are not the same. Despite significant differences in gene expression between these two hepatocyte populations, it is still unclear whether the differences are present at the higher levels of chromatin organization. In this study, we present results, indicating that periportal and perivenous hepatocytes, when stained using toluidine blue histological dye, have different chromatin textural patterns quantified with gray-level co-occurrence matrix (GLCM) method. Hepatic tissue was obtained from ten male, healthy mice. Chromatin structures were analyzed using GLCM. For each structure, we measured the values of angular second moment, inverse difference moment, GLCM Contrast, GLCM Variance, and GLCM Sum Variance. The results indicate that there is a statistically significant difference in all GLCM mathematical parameters except the contrast. In addition, some chromatin GLCM features were in correlation with serum aminotransferase levels in perivenous, but not in periportal hepatocytes. To the best of our knowledge, this is the first study to test the nuclear morphological differences between hepatocytes using GLCM and to investigate the respective relation with serum liver enzymes.

Indexed as

AlgorithmsAnimalsChromatinColoring AgentsGene ExpressionHepatocytesHistocytochemistryMaleMiceMice, Inbred C57BLStaining and LabelingTolonium ChlorideChromatinColoring AgentsTolonium ChlorideChromatinMacromoleculeMolecular biologyOptical imagingTexture

Identifiers

PMID30140953
OpenAlexW2888593287

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.