Evidence map›Paper›PMID 30140076›Full record

ArticleScientific reports2018

Marchantia liverworts as a proxy to plants' basal microbiomes.

Luis D Alcaraz, Mariana Peimbert, Hugo R Barajas, Ana E Dorantes-Acosta, John L Bowman, Mario A Arteaga-Vázquez

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
10.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 72 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Frontiers in plant science · 2024
    Article
  5. Analysis ofFrontiers in plant science · 2024
    Review
  6. The biology ofFrontiers in plant science · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Effects ofPlant direct · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Luis D AlcarazDepartamento de Biología Celular, Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, UNAM, 04510, Coyoacán, Mexico City, Mexico. lalcaraz@ciencias.unam.mx.ORCID 0000-0003-3284-0605
Mariana PeimbertDepartamento de Ciencias Naturales, Universidad Autónoma Metropolitana, Unidad Cuajimalpa, Av. Vasco de Quiroga 4871, Col. Santa Fe Cuajimalpa, 05348, Mexico City, Mexico.
Hugo R BarajasDepartamento de Biología Celular, Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, UNAM, 04510, Coyoacán, Mexico City, Mexico.
Ana E Dorantes-AcostaUniversity of Veracruz, Institute for Biotechnology and Applied Ecology (INBIOTECA), Avenida de las Culturas Veracruzanas 101, Colonia Emiliano Zapata, 91090, Xalapa, Veracruz, Mexico.
John L BowmanSchool of Biological Sciences, Monash University, Melbourne, Victoria, 3800, Australia.
Mario A Arteaga-VázquezUniversity of Veracruz, Institute for Biotechnology and Applied Ecology (INBIOTECA), Avenida de las Culturas Veracruzanas 101, Colonia Emiliano Zapata, 91090, Xalapa, Veracruz, Mexico. maarteaga@uv.mx.
Universidad Nacional Autónoma de México · MXUniversidad Veracruzana · MXMonash University · AUUniversidad Autónoma Metropolitana · MX

Funding

Consejo Nacional de Ciencia y Tecnología (National Council of Science and Technology, Mexico) 237387Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México (Dirección General Asuntos del Personal Académico, Universidad Nacional Autónoma de México) TA200117
6 · The paper itself

Abstract

Microbiomes influence plant establishment, development, nutrient acquisition, pathogen defense, and health. Plant microbiomes are shaped by interactions between the microbes and a selection process of host plants that distinguishes between pathogens, commensals, symbionts and transient bacteria. In this work, we explore the microbiomes through massive sequencing of the 16S rRNA genes of microbiomes two Marchantia species of liverworts. We compared microbiomes from M. polymorpha and M. paleacea plants collected in the wild relative to their soils substrates and from plants grown in vitro that were established from gemmae obtained from the same populations of wild plants. Our experimental setup allowed identification of microbes found in both native and in vitro Marchantia species. The main OTUs (97% identity) in Marchantia microbiomes were assigned to the following genera: Methylobacterium, Rhizobium, Paenibacillus, Lysobacter, Pirellula, Steroidobacter, and Bryobacter. The assigned genera correspond to bacteria capable of plant-growth promotion, complex exudate degradation, nitrogen fixation, methylotrophs, and disease-suppressive bacteria, all hosted in the relatively simple anatomy of the plant. Based on their long evolutionary history Marchantia is a promising model to study not only long-term relationships between plants and their microbes but also the transgenerational contribution of microbiomes to plant development and their response to environmental changes.

Indexed as

BacteriaHost Microbial InteractionsMarchantiaMicrobiotaPhylogenyRNA, Ribosomal, 16SSequence Analysis, RNASoil MicrobiologySymbiosisRNA, Ribosomal, 16S

Identifiers

PMID30140076
PMCPMC6107579
OpenAlexW2952700084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.