Evidence map›Paper›PMID 30140003›Full record

ArticleNature communications2018

Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.

Masamichi Nagae, Yasuhiko Kizuka, Emiko Mihara, Yu Kitago, Shinya Hanashima, Yukishige Ito, Junichi Takagi, Naoyuki Taniguchi, Yoshiki Yamaguchi

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. The Role of Glycans in Human Immunity-A Sweet Code.Molecules (Basel, Switzerland) · 2025
    Review
  10. Article
  11. Structural glycobiology - from enzymes to organelles.Biochemical Society transactions · 2025
    Review
  12. Article
  13. Glycosylation in Cancer.Handbook of experimental pharmacology · 2025
    Review
  14. Review
  15. A Bioorthogonal Precision Tool for HumanJournal of the American Chemical Society · 2024
    Article
  16. Review
  17. The Association between UrineBiomedicines · 2024
    Article
  18. Association ofmedRxiv : the preprint server for health sciences · 2023
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Masamichi NagaeStructural Glycobiology Team, Glycobiology Research Group, Global Research Cluster, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan. mnagae@mol.f.u-tokyo.ac.jp.
Yasuhiko KizukaDisease Glycomics Team, Systems Glycobiology Research Group, Global Research Cluster, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
Emiko MiharaInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.
Yu KitagoInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.
Shinya HanashimaDepartment of Chemistry, Osaka University, Machikaneyama, Toyonaka, Osaka, 560-0043, Japan.
Yukishige ItoSynthetic Cellular Chemistry Laboratory, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.ORCID http://orcid.org/0000-0001-6251-7249
Junichi TakagiInstitute for Protein Research, Osaka University, Suita, Osaka, 565-0871, Japan.
Naoyuki TaniguchiDisease Glycomics Team, Systems Glycobiology Research Group, Global Research Cluster, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
Yoshiki YamaguchiStructural Glycobiology Team, Glycobiology Research Group, Global Research Cluster, RIKEN, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
RIKEN · JPProtein Research Foundation · JPRIKEN Advanced Science Institute · JPToneyama National Hospital · JP

Funding

Ministry of Education, Culture, Sports, Science, and Technology (MEXT) 15K18496Ministry of Education, Culture, Sports, Science, and Technology (MEXT) 17K07303Ministry of Education, Culture, Sports, Science, and Technology (MEXT) 26110724
6 · The paper itself

Abstract

N-acetylglucosaminyltransferase-V (GnT-V) alters the structure of specific N-glycans by modifying α1-6-linked mannose with a β1-6-linked N-acetylglucosamine branch. β1-6 branch formation on cell surface receptors accelerates cancer metastasis, making GnT-V a promising target for drug development. However, the molecular basis of GnT-V's catalytic mechanism and substrate specificity are not fully understood. Here, we report crystal structures of human GnT-V luminal domain with a substrate analog. GnT-V luminal domain is composed of a GT-B fold and two accessary domains. Interestingly, two aromatic rings sandwich the α1-6 branch of the acceptor N-glycan and restrain the global conformation, partly explaining the fine branch specificity of GnT-V. In addition, interaction of the substrate N-glycoprotein with GnT-V likely contributes to protein-selective and site-specific glycan modification. In summary, the acceptor-GnT-V complex structure suggests a catalytic mechanism, explains the previously observed inhibition of GnT-V by branching enzyme GnT-III, and provides a basis for the rational design of drugs targeting N-glycan branching.

Indexed as

Antineoplastic AgentsBiocatalysisCatalytic DomainCrystallography, X-RayDrug DesignEnzyme AssaysGlycoproteinsHumansMolecular Docking SimulationMutagenesis, Site-DirectedN-AcetylglucosaminyltransferasesNeoplasmsPolysaccharidesSubstrate SpecificityAntineoplastic AgentsGlycoproteinsMgat5 protein, humanN-AcetylglucosaminyltransferasesPolysaccharides

Identifiers

PMID30140003
PMCPMC6107550
OpenAlexW2887208780

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.