Evidence map›Paper›PMID 30139988›Full record

ArticleEuropean journal of human genetics : EJHG2018

Genetics of hearing loss in the Arab population of Northern Israel.

Nada Danial-Farran, Zippora Brownstein, Suleyman Gulsuner, Luna Tammer, Morad Khayat, Ola Aleme, Elena Chervinsky, Olfat Aboleile Zoubi, Tom Walsh, Gil Ast and 3 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Nada Danial-FarranGenetics Institute, Emek Medical Center, Afula, Israel.
Zippora BrownsteinDepartment of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Suleyman GulsunerDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA.
Luna TammerDepartment of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Morad KhayatGenetics Institute, Emek Medical Center, Afula, Israel.
Ola AlemeGenetics Institute, Emek Medical Center, Afula, Israel.
Elena ChervinskyGenetics Institute, Emek Medical Center, Afula, Israel.
Olfat Aboleile ZoubiGenetics Institute, Emek Medical Center, Afula, Israel.
Tom WalshDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA.
Gil AstDepartment of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel.
Mary-Claire KingDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, WA, USA.
Karen B AvrahamDepartment of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel. karena@tauex.tau.ac.il.ORCID http://orcid.org/0000-0002-4913-251X
Stavit A ShalevGenetics Institute, Emek Medical Center, Afula, Israel. stavit_sh@clalit.org.il.
Tel Aviv University · ILEmek Medical Center · ILUniversity of Washington Medical Center · USTechnion – Israel Institute of Technology · IL

Funding

Genomic Approaches to Discovery and Characterization of Genes for Inherited Hearing LossR01DC011835 · NIDCD · TEL AVIV UNIVERSITY · PI AVRAHAM, KAREN B., KANAAN, MOIEN · 2011 to 2022
$3.5M
NIDCD NIH HHS R01 DC011835NIDCD NIH HHS R01-DC011835
6 · The paper itself

Abstract

For multiple generations, much of the Arab population of Northern Israel has lived in communities with consanguineous marriages and large families. These communities have been particularly cooperative and informative for understanding the genetics of recessive traits. We studied the genetics of hearing loss in this population, evaluating 168 families from 46 different villages. All families were screened for founder variants by Sanger sequencing and 13 families were further evaluated by sequencing all known genes for hearing loss using our targeted gene panel HEar-Seq. Deafness in 34 of 168 families (20%) was explained by founder variants in GJB2, SLC26A4, or OTOF. In 6 of 13 families (46%) evaluated using HEar-Seq, deafness was explained by damaging alleles of SLC26A4, MYO15A, OTOG, LOXHD1, and TBC1D24. In some genes critical to hearing, it is particularly difficult to interpret variants that might affect splicing, because the genes are not expressed in accessible tissue. To address this problem for possible splice-altering variants of MYO15A, we evaluated minigenes transfected into HEK293 cells. Results revealed exon skipping in the message of MYO15A c.9083+6T>A, and intron retention in the message of MYO15A c.8340G>A, in each case leading to a premature stop and consistent with co-segregation of homozygosity for each variant with hearing loss. The profile of genetics of hearing loss in this population reflects the genetic heterogeneity of hearing loss and the usefulness of synthetic technologies to evaluate potentially causal variants in genes not expressed in accessible tissues.

Indexed as

Mutation RateArabsCarrier ProteinsConnexin 26ConnexinsFemaleGTPase-Activating ProteinsHearing LossHEK293 CellsHumansIsraelMaleMembrane ProteinsMyosinsNerve Tissue ProteinsPedigreeCarrier ProteinsConnexin 26ConnexinsGJB2 protein, humanGTPase-Activating ProteinsLOXHD1 protein, humanMembrane ProteinsMYO15A protein, humanMyosinsNerve Tissue ProteinsOTOF protein, humanSLC26A4 protein, humanSulfate TransportersTBC1D24 protein, human

Identifiers

PMID30139988
PMCPMC6244407
OpenAlexW2888654573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.