Evidence map›Paper›PMID 30139800›Full record

ArticleRNA (New York, N.Y.)2018

Structure of the 30S ribosomal decoding complex at ambient temperature.

E Han Dao, Frédéric Poitevin, Raymond G Sierra, Cornelius Gati, Yashas Rao, Halil Ibrahim Ciftci, Fulya Akşit, Alex McGurk, Trevor Obrinski, Paul Mgbam and 11 more

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Evaluation of the protective role ofOpen veterinary journal · 2025
    Article
  3. Review
  4. Review
  5. Article
  6. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  7. Article
  8. What is the structural chemistry of the living organism at its temperature and pressure?Acta crystallographica. Section D, Structural biology · 2020
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

E Han DaoStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.
Frédéric PoitevinStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.
Raymond G SierraStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.
Cornelius GatiDepartment of Structural Biology, Stanford University, Palo Alto, California 94305, USA.
Yashas RaoStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.
Halil Ibrahim CiftciStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.
Fulya AkşitStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.
Alex McGurkLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Trevor ObrinskiLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Paul MgbamLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Brandon HayesLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Casper De LichtenbergInstitutionen för Kemi, Kemiskt Biologiskt Centrum, Umeå Universitet, SE-901 87 Umeå, Sweden.
Fatima Pardo-AvilaDepartment of Structural Biology, Stanford University, Palo Alto, California 94305, USA.
Nicholas CorsepiusDepartment of Structural Biology, Stanford University, Palo Alto, California 94305, USA.
Lindsey ZhangLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Matthew H SeabergLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Mark S HunterLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Mengling LiangLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Jason E KoglinLinac Coherent Light Source, SLAC National Laboratory, Menlo Park, California 94025, USA.
Soichi WakatsukiDepartment of Structural Biology, Stanford University, Palo Alto, California 94305, USA.
Hasan DemirciStanford PULSE Institute, SLAC National Laboratory, Menlo Park, California 94025, USA.

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Emergent Properties of Complex Systems: From Atoms to Macromolecules; from Humans to SocietiesR35GM122543 · NIGMS · STANFORD UNIVERSITY · PI MICHAEL LEVITT · 2017 to 2026
$5.1M
NCRR NIH HHS P41 RR001209NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R35 GM122543
6 · The paper itself

Abstract

The ribosome translates nucleotide sequences of messenger RNA to proteins through selection of cognate transfer RNA according to the genetic code. To date, structural studies of ribosomal decoding complexes yielding high-resolution data have predominantly relied on experiments performed at cryogenic temperatures. New light sources like the X-ray free electron laser (XFEL) have enabled data collection from macromolecular crystals at ambient temperature. Here, we report an X-ray crystal structure of the

Indexed as

Nucleic Acid ConformationAdenosineCrystallography, X-RayGenetic CodeLasersMacromolecular SubstancesRibosomesRibosome Subunits, Small, BacterialRNA, MessengerTemperatureThermus thermophilusX-RaysAdenosineMacromolecular SubstancesRNA, Messengerambient temperatureantibioticsdecodingribosomeserial femtosecond X-ray crystallography

Identifiers

PMID30139800
PMCPMC6239188

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.